Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HPSH112_RS07355 | Genome accession | NC_017741 |
| Coordinates | 1519331..1519906 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203560.1 | Uniprot ID | A0AAE7P6A2 |
| Organism | Helicobacter pylori Shi112 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1514331..1524906
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH112_RS07345 (HPSH112_07450) | - | 1516040..1517209 (-) | 1170 | WP_000502608.1 | restriction endonuclease subunit S | - |
| HPSH112_RS07350 (HPSH112_07455) | - | 1517259..1519298 (-) | 2040 | WP_001147671.1 | class I SAM-dependent DNA methyltransferase | - |
| HPSH112_RS07355 (HPSH112_07460) | comFC | 1519331..1519906 (-) | 576 | WP_001203560.1 | ComF family protein | Machinery gene |
| HPSH112_RS07360 (HPSH112_07465) | tmk | 1519894..1520469 (-) | 576 | WP_000289772.1 | dTMP kinase | - |
| HPSH112_RS07365 (HPSH112_07470) | coaD | 1520471..1520944 (-) | 474 | WP_014662293.1 | pantetheine-phosphate adenylyltransferase | - |
| HPSH112_RS07370 (HPSH112_07475) | - | 1520944..1521507 (-) | 564 | WP_000780116.1 | UbiX family flavin prenyltransferase | - |
| HPSH112_RS07375 (HPSH112_07480) | flgA | 1521517..1522173 (-) | 657 | WP_000697511.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HPSH112_RS07380 (HPSH112_07485) | uvrD | 1522170..1524215 (-) | 2046 | WP_000345161.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21262.98 Da Isoelectric Point: 9.4455
>NTDB_id=50546 HPSH112_RS07355 WP_001203560.1 1519331..1519906(-) (comFC) [Helicobacter pylori Shi112]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAINAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRAINAVSYAGKSLEFRANNPRNFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=50546 HPSH112_RS07355 WP_001203560.1 1519331..1519906(-) (comFC) [Helicobacter pylori Shi112]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCTGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |