Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ITJ83_RS00040 Genome accession   NZ_CP064860
Coordinates   9235..9813 (+) Length   192 a.a.
NCBI ID   WP_059074772.1    Uniprot ID   -
Organism   Companilactobacillus futsaii strain CQ16Z11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4235..14813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITJ83_RS00025 gyrB 4241..6190 (+) 1950 WP_057813418.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  ITJ83_RS00030 gyrA 6207..8699 (+) 2493 WP_195701557.1 DNA gyrase subunit A -
  ITJ83_RS00035 rpsF 8901..9197 (+) 297 WP_057813414.1 30S ribosomal protein S6 -
  ITJ83_RS00040 ssb 9235..9813 (+) 579 WP_059074772.1 single-stranded DNA-binding protein Machinery gene
  ITJ83_RS00045 rpsR 9835..10071 (+) 237 WP_010017915.1 30S ribosomal protein S18 -
  ITJ83_RS00050 - 10584..10784 (+) 201 WP_057813410.1 helix-turn-helix transcriptional regulator -
  ITJ83_RS00055 - 10815..11348 (+) 534 WP_195701558.1 hypothetical protein -
  ITJ83_RS00060 - 11505..13505 (+) 2001 WP_195701559.1 DHH family phosphoesterase -
  ITJ83_RS00065 rplI 13519..13974 (+) 456 WP_057813404.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21282.61 Da        Isoelectric Point: 4.7512

>NTDB_id=505411 ITJ83_RS00040 WP_059074772.1 9235..9813(+) (ssb) [Companilactobacillus futsaii strain CQ16Z11]
MINRVVLVGRLTRDPELRYTANGAAVASFTVAVNRQFTNSQGEREADFINCVIWRKAAENFSNFTNKGSLVGIDGRLQTR
NYENQQGQRVYVTEVVVENFSLLESRAESEKRNAGNNSNQAPSYNNNNQSNQSPFGNNNNNNYGNNAGNSNFDNSNNNSN
NNNQSNNSNNNSGDPFANNSKPIDISDDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=505411 ITJ83_RS00040 WP_059074772.1 9235..9813(+) (ssb) [Companilactobacillus futsaii strain CQ16Z11]
ATGATTAATCGAGTAGTTTTAGTTGGACGCCTGACACGTGATCCAGAATTAAGATATACTGCTAATGGAGCAGCGGTTGC
CAGTTTTACAGTTGCTGTAAACAGACAATTTACTAATTCTCAAGGTGAACGTGAAGCCGATTTTATCAATTGTGTCATTT
GGAGAAAAGCTGCCGAGAATTTTTCTAATTTCACTAATAAAGGTTCTCTTGTAGGTATTGATGGACGTCTTCAAACACGT
AACTATGAAAACCAACAAGGACAACGAGTATATGTAACAGAGGTAGTTGTAGAAAACTTCTCCTTGTTAGAATCTCGTGC
CGAAAGTGAAAAGAGAAACGCCGGTAACAATTCCAATCAAGCACCTAGCTATAATAACAACAATCAATCAAATCAGTCTC
CATTTGGAAATAATAATAACAACAATTATGGAAATAACGCTGGCAACAGCAATTTCGATAATAGTAACAACAATTCTAAT
AACAATAATCAATCTAACAATTCTAACAATAATAGTGGCGATCCTTTTGCTAACAATAGCAAACCGATTGACATTTCTGA
TGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.979

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.995

100

0.573