Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPSH112_RS01920 Genome accession   NC_017741
Coordinates   394386..394790 (+) Length   134 a.a.
NCBI ID   WP_000599165.1    Uniprot ID   A0AAE7TSC0
Organism   Helicobacter pylori Shi112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 389386..399790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH112_RS01885 (HPSH112_01940) - 389566..390504 (-) 939 WP_000833938.1 tetraacyldisaccharide 4'-kinase -
  HPSH112_RS01890 (HPSH112_01945) - 390501..391283 (-) 783 WP_001168078.1 NAD+ synthase -
  HPSH112_RS01900 (HPSH112_01950) ilvC 391530..392522 (+) 993 WP_001207777.1 ketol-acid reductoisomerase -
  HPSH112_RS01905 (HPSH112_01955) minD 392541..393347 (+) 807 WP_001019023.1 septum site-determining protein MinD -
  HPSH112_RS01910 (HPSH112_01960) minE 393344..393577 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HPSH112_RS01915 (HPSH112_01965) dprA 393589..394389 (+) 801 WP_000840094.1 DNA-processing protein DprA Machinery gene
  HPSH112_RS01920 (HPSH112_01970) dprB 394386..394790 (+) 405 WP_000599165.1 Holliday junction resolvase RuvX Machinery gene
  HPSH112_RS08190 (HPSH112_01975) - 395027..395398 (+) 372 WP_014662205.1 tetratricopeptide repeat protein -
  HPSH112_RS08985 - 395409..395498 (+) 90 WP_411155629.1 hypothetical protein -
  HPSH112_RS01930 (HPSH112_01980) - 395692..396030 (+) 339 WP_000699918.1 hypothetical protein -
  HPSH112_RS01935 (HPSH112_01985) - 396014..396574 (+) 561 WP_000037125.1 hypothetical protein -
  HPSH112_RS01940 (HPSH112_01990) - 396731..397612 (-) 882 WP_001117116.1 RluA family pseudouridine synthase -
  HPSH112_RS01945 (HPSH112_01995) recJ 397612..399162 (-) 1551 WP_000810779.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15154.70 Da        Isoelectric Point: 9.2303

>NTDB_id=50539 HPSH112_RS01920 WP_000599165.1 394386..394790(+) (dprB) [Helicobacter pylori Shi112]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=50539 HPSH112_RS01920 WP_000599165.1 394386..394790(+) (dprB) [Helicobacter pylori Shi112]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCACGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955

Multiple sequence alignment