Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   IXK98_RS10920 Genome accession   NZ_CP064858
Coordinates   473954..474574 (-) Length   206 a.a.
NCBI ID   WP_004742614.1    Uniprot ID   F9SZR2
Organism   Vibrio europaeus strain 07/118 T2     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 468954..479574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS10910 (IXK98_10910) aceF 470098..471978 (+) 1881 WP_171801087.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  IXK98_RS10915 (IXK98_10915) lpdA 472234..473661 (+) 1428 WP_069667583.1 dihydrolipoyl dehydrogenase -
  IXK98_RS10920 (IXK98_10920) opaR 473954..474574 (-) 621 WP_004742614.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  IXK98_RS10925 (IXK98_10925) hpt 474878..475408 (+) 531 WP_069667582.1 hypoxanthine phosphoribosyltransferase -
  IXK98_RS10930 (IXK98_10930) can 475488..476156 (-) 669 WP_069667581.1 carbonate dehydratase -
  IXK98_RS10935 (IXK98_10935) - 476570..478240 (+) 1671 WP_171801088.1 SulP family inorganic anion transporter -
  IXK98_RS10940 (IXK98_10940) - 478409..479326 (+) 918 WP_069667694.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23812.13 Da        Isoelectric Point: 5.6218

>NTDB_id=505384 IXK98_RS10920 WP_004742614.1 473954..474574(-) (opaR) [Vibrio europaeus strain 07/118 T2]
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLNNLTSAMVELVLNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFVKAIERGEVCEEHEPA
ELATLFHGIFYSLFVQANRTQDEDGMKKLTESYLDMLCIYKHAKNA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=505384 IXK98_RS10920 WP_004742614.1 473954..474574(-) (opaR) [Vibrio europaeus strain 07/118 T2]
ATGGACTCAATTGCTAAAAGACCGCGTACGCGTCTTTCACCGCAAAAACGAAAACAGCAACTAATGGAAATCGCACTGGA
AGTGTTTGCTCGTCGTGGCATTGGCCGCGGTGGTCACGCTGACATCGCAGAAATTGCGCAGGTTTCTGTGGCTACTGTCT
TCAACTACTTTCCTACACGCGAAGATCTGGTCGATGACGTACTCAACTACGTTGTTCGTCAATTCTCAAACTTCCTATCA
GACAATATCGACTTAGATATTCATGCGAAAGAAAATCTAAATAACCTGACTTCAGCAATGGTTGAACTGGTACTTAACGA
CTGCCACTGGCTTAAAGTGTGGTTCGAGTGGAGTGCATCAACTCGTGATGAAGTATGGCCACTGTTTGTTTCAACAAACC
GTACTAACCAACTCTTGGTTCAGAATATGTTTGTTAAGGCTATTGAACGTGGCGAAGTGTGTGAAGAGCATGAGCCTGCT
GAACTAGCGACTCTATTCCACGGCATCTTCTACTCACTGTTTGTGCAAGCAAACCGTACTCAAGATGAAGACGGCATGAA
GAAGCTAACAGAAAGCTACTTAGACATGCTTTGCATCTACAAACACGCGAAAAACGCGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

85

97.087

0.825
  hapR Vibrio cholerae C6706

76.5

97.087

0.743
  hapR Vibrio cholerae strain A1552

76.5

97.087

0.743