Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IXK98_RS07125 Genome accession   NZ_CP064857
Coordinates   1541920..1543101 (-) Length   393 a.a.
NCBI ID   WP_195876877.1    Uniprot ID   -
Organism   Vibrio europaeus strain 07/118 T2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536920..1548101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS07120 (IXK98_07120) cqsS 1539810..1541864 (+) 2055 WP_171802951.1 hybrid sensor histidine kinase/response regulator Regulator
  IXK98_RS07125 (IXK98_07125) cqsA 1541920..1543101 (-) 1182 WP_195876877.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IXK98_RS07130 (IXK98_07130) - 1543311..1544282 (-) 972 WP_171802952.1 TDT family transporter -
  IXK98_RS07135 (IXK98_07135) clcA 1544400..1545800 (-) 1401 WP_195876878.1 H(+)/Cl(-) exchange transporter ClcA -
  IXK98_RS07140 (IXK98_07140) - 1546221..1547201 (-) 981 WP_195876879.1 CobW family GTP-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43733.02 Da        Isoelectric Point: 7.1194

>NTDB_id=505367 IXK98_RS07125 WP_195876877.1 1541920..1543101(-) (cqsA) [Vibrio europaeus strain 07/118 T2]
MNMLTTRSRLPEFIDRRINYYVSDLINKKDNGRNLVLGKKPHPGDIILQSNDYLALTHHPKIIDAQVNSLLSKKDTAFMS
NVFLHSDGLDKSVEHHLADYTGFQTCTIAPSGWIANIGLLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNAK
HLRRLIKRNGPGVVLIDSIYSTIGTIAPLQEMVSLAKELDCAIVVDESHSVGVYGPKGAGLLQELGLTEQVDFMTASLAK
TFAYRAGAVWCNNLTGQVVPYVSFPSIFSSAMMSFELDRIDATLSVIKESDQSRKRLMECSEQVREGLANIGYNIRSESQ
IISLETAEKTNTRKVRDFFEDHGVFGSVFCTPATPDNKNILRLSLNSALTSTDIDKILSVAKKAHKNKELYFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=505367 IXK98_RS07125 WP_195876877.1 1541920..1543101(-) (cqsA) [Vibrio europaeus strain 07/118 T2]
ATGAATATGTTAACAACGCGATCTCGCCTGCCCGAGTTTATCGACAGACGAATCAACTACTATGTTTCTGACCTAATAAA
TAAAAAAGATAATGGTAGAAACCTAGTTTTAGGTAAGAAGCCGCACCCGGGTGATATCATTTTGCAAAGTAATGATTACC
TTGCGCTGACCCATCACCCTAAAATCATAGACGCTCAAGTTAATTCATTGCTCTCCAAGAAAGACACGGCATTTATGTCT
AATGTGTTTTTACACAGTGATGGACTAGATAAATCCGTTGAGCACCATCTTGCGGATTACACTGGGTTTCAAACTTGTAC
CATTGCCCCATCAGGTTGGATTGCCAACATCGGCCTACTTCAAACCATCTGTGATTCAGAAACCAATGTGTACATCGACT
TCTTTGCGCATATGTCACTTTGGGAAGGGGCTCGCATCGCTGGTGCCAATATCCACCCCTTTATGCATAACAATGCCAAG
CACCTTAGGCGGTTAATCAAACGCAATGGTCCTGGCGTGGTTTTAATTGACTCGATTTACAGTACGATTGGCACCATTGC
ACCACTTCAGGAAATGGTCTCTCTAGCCAAAGAGTTAGATTGTGCGATTGTCGTCGATGAGTCTCACTCGGTTGGTGTTT
ACGGCCCTAAAGGTGCCGGATTACTTCAAGAGCTCGGCCTCACTGAACAGGTCGACTTCATGACTGCCAGCCTAGCAAAA
ACATTTGCTTATCGCGCTGGTGCAGTTTGGTGTAATAACTTAACAGGTCAAGTAGTGCCCTACGTCTCCTTTCCTTCCAT
CTTCAGCTCTGCAATGATGTCGTTCGAGCTCGATAGAATTGATGCCACATTAAGTGTCATTAAGGAAAGTGATCAATCCC
GCAAGCGTCTTATGGAATGTTCAGAGCAAGTTCGTGAAGGTCTTGCAAATATTGGCTATAACATTCGTAGCGAATCTCAA
ATAATTAGCTTAGAAACCGCTGAAAAAACCAATACACGTAAGGTACGAGATTTTTTTGAAGACCATGGCGTATTCGGTTC
TGTTTTCTGTACACCTGCGACGCCGGATAATAAAAACATCTTACGTTTATCTTTAAATAGTGCTTTAACTAGTACTGATA
TTGATAAGATTTTATCGGTCGCGAAGAAAGCCCACAAAAATAAGGAACTTTATTTCGTATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.959

98.219

0.55