Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   IXK98_RS07120 Genome accession   NZ_CP064857
Coordinates   1539810..1541864 (+) Length   684 a.a.
NCBI ID   WP_171802951.1    Uniprot ID   A0AAE7AYF8
Organism   Vibrio europaeus strain 07/118 T2     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1534810..1546864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXK98_RS07110 (IXK98_07110) - 1535427..1536557 (+) 1131 WP_195876875.1 exonuclease SbcCD subunit D -
  IXK98_RS07115 (IXK98_07115) - 1536566..1539613 (+) 3048 WP_195876876.1 SbcC/MukB-like Walker B domain-containing protein -
  IXK98_RS07120 (IXK98_07120) cqsS 1539810..1541864 (+) 2055 WP_171802951.1 hybrid sensor histidine kinase/response regulator Regulator
  IXK98_RS07125 (IXK98_07125) cqsA 1541920..1543101 (-) 1182 WP_195876877.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IXK98_RS07130 (IXK98_07130) - 1543311..1544282 (-) 972 WP_171802952.1 TDT family transporter -
  IXK98_RS07135 (IXK98_07135) clcA 1544400..1545800 (-) 1401 WP_195876878.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 684 a.a.        Molecular weight: 78687.77 Da        Isoelectric Point: 5.4489

>NTDB_id=505366 IXK98_RS07120 WP_171802951.1 1539810..1541864(+) (cqsS) [Vibrio europaeus strain 07/118 T2]
MNVVKKIYQYADPNLELVGWMGFFGFPAYFYIWSYMYPQPYENAPLRFFCALLLLGLALRKYTPPPLKRYLPYYYLVTIT
ICLPFFFSFMMFMNEWSTVWAMSFMSSIFLHVLLVHETRVMLLQAMIAIVAAYLFSYGLEHAPAKVETEVVVIWPYIPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASVDVLDSSLPSIKTIKGDKAEIDKLDIERMKEVLS
GADEVIRNGNEAIDLLLTSIDQSRVSHSTFRSYSVEKIARESLASFSYPSDHAKQVVNLHVESDFDYFGSDTLLKYALYN
LLKNSLYYQNGEEFKIAITIRSDHEFNYLYFEDNGIGIEKDKLEFVFKDFYTSGKSSSYGLGLPFCKRVMHAFGGRIKCE
SVLGEWTRFTLKFPRYESQKVTSIKQDILRTKSMLYVGDDVAVKRKLNEFTFYTGALCDVVDFEQARAKEEFEFEYDLIL
LDLETCSEQEYLMLESKLHFTEAKIVMLFAHDGQYHNRFSRFLTFYPKEKAQFLLDVTQSVDSLMFGNVEPNRNLIPKKA
PAVVGKRILIADDNESMRQLTTILLNKQGYQVSQAGDGNEVLSVLSSEQVDLILMDLEMPMLDGLETTTLIRESEEVYAN
VPILGHTGDNRKETLTKIDQAGMNGYLIKPVDKVKLLDKVADYI

Nucleotide


Download         Length: 2055 bp        

>NTDB_id=505366 IXK98_RS07120 WP_171802951.1 1539810..1541864(+) (cqsS) [Vibrio europaeus strain 07/118 T2]
ATGAATGTAGTAAAGAAGATTTATCAGTACGCAGATCCCAACCTTGAGTTAGTCGGGTGGATGGGATTCTTCGGCTTTCC
AGCATACTTCTACATTTGGTCGTACATGTACCCGCAGCCCTATGAAAATGCGCCGTTAAGGTTTTTTTGCGCTTTGCTCC
TGTTAGGGCTCGCGTTAAGAAAATATACGCCTCCTCCACTGAAACGATATCTGCCTTATTACTACTTGGTGACAATCACC
ATCTGCTTACCGTTCTTTTTCTCGTTTATGATGTTTATGAATGAATGGTCGACAGTATGGGCAATGTCCTTCATGTCTTC
GATCTTTCTTCATGTGTTATTAGTCCATGAGACTCGTGTCATGTTGCTGCAGGCGATGATTGCCATCGTAGCGGCCTACT
TGTTTAGCTATGGATTAGAACACGCGCCTGCCAAAGTCGAGACAGAAGTGGTCGTGATTTGGCCTTACATCCCAATTTTC
TTGTTTACTTATGTCTTTGGTAACTTGTTCTATTTCCGTAACCAAGTAGAGCATGAGTCGAAAGTCTCAATTGCCAAGTC
ATTTGGCGCGGGTATCGCTCATGAAATGCGCAATCCGTTAAGCGCACTTAAAGCATCCGTAGACGTACTCGACTCGTCTT
TACCTTCTATCAAGACGATTAAAGGAGACAAAGCAGAGATCGATAAGCTGGATATCGAGCGCATGAAAGAAGTGCTTTCA
GGAGCTGATGAAGTCATACGCAATGGTAACGAAGCGATAGACTTATTGCTTACCTCCATTGACCAGAGCCGAGTATCACA
CTCAACGTTTCGGTCTTATTCTGTCGAGAAGATCGCCAGAGAGTCGTTGGCAAGTTTCTCTTATCCTAGCGATCACGCCA
AACAAGTGGTGAATTTACATGTCGAAAGTGACTTTGACTATTTTGGTAGCGATACGTTATTGAAGTATGCGCTGTACAAT
TTGCTAAAAAACTCACTCTATTACCAGAATGGTGAAGAGTTTAAGATTGCGATCACGATCAGGAGTGATCATGAGTTTAA
CTATCTCTACTTCGAAGACAACGGAATCGGGATAGAGAAAGATAAATTAGAGTTTGTCTTTAAAGATTTTTATACCTCAG
GAAAATCCTCAAGCTACGGGCTTGGATTGCCTTTTTGTAAACGTGTCATGCACGCTTTTGGCGGCAGAATAAAATGTGAG
TCGGTACTCGGAGAGTGGACGCGCTTTACCCTTAAATTTCCTCGCTATGAGTCCCAAAAAGTGACTTCAATCAAACAAGA
TATTCTAAGAACCAAATCAATGCTTTACGTTGGTGATGATGTGGCGGTCAAGCGCAAGTTAAACGAGTTTACTTTCTACA
CTGGGGCGCTGTGTGATGTGGTCGATTTTGAGCAGGCTAGGGCGAAGGAAGAGTTCGAATTTGAATACGATTTGATACTA
CTCGATCTAGAGACATGCAGTGAGCAAGAGTATCTAATGTTGGAGTCTAAGCTCCACTTTACTGAAGCAAAAATCGTGAT
GCTTTTTGCTCATGATGGTCAGTACCATAATCGATTCAGCCGATTCCTTACATTTTATCCAAAGGAGAAAGCGCAATTTC
TGCTTGATGTTACTCAGTCGGTTGATTCGCTTATGTTTGGTAACGTCGAACCTAATCGAAACCTTATTCCGAAAAAAGCA
CCTGCCGTGGTTGGTAAGCGTATCTTGATTGCCGATGACAATGAATCAATGAGGCAGTTAACCACTATCTTGCTTAACAA
ACAGGGCTACCAAGTTTCTCAGGCCGGAGATGGCAATGAGGTGTTGAGTGTTCTGAGCAGTGAACAGGTTGATTTGATTC
TGATGGACCTCGAAATGCCAATGTTGGATGGCTTAGAAACTACAACTCTTATTCGAGAGTCAGAAGAAGTCTACGCTAAC
GTGCCGATTCTTGGGCACACCGGTGATAATCGAAAAGAAACCCTCACTAAAATAGACCAGGCGGGTATGAATGGATACTT
AATTAAGCCTGTCGATAAAGTTAAATTACTTGATAAAGTAGCGGATTACATCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(568-680)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

49.419

100

0.497