Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPSH169_RS07130 Genome accession   NC_017740
Coordinates   1474781..1475356 (-) Length   191 a.a.
NCBI ID   WP_001203559.1    Uniprot ID   -
Organism   Helicobacter pylori Shi169     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469781..1480356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH169_RS08185 - 1471464..1472712 (-) 1249 Protein_1383 restriction endonuclease subunit S -
  HPSH169_RS07125 (HPSH169_07250) - 1472709..1474748 (-) 2040 WP_001147673.1 class I SAM-dependent DNA methyltransferase -
  HPSH169_RS07130 (HPSH169_07255) comFC 1474781..1475356 (-) 576 WP_001203559.1 ComF family protein Machinery gene
  HPSH169_RS07135 (HPSH169_07260) tmk 1475344..1475919 (-) 576 WP_000289769.1 dTMP kinase -
  HPSH169_RS07140 (HPSH169_07265) coaD 1475921..1476394 (-) 474 WP_014662164.1 pantetheine-phosphate adenylyltransferase -
  HPSH169_RS07145 (HPSH169_07270) - 1476394..1476957 (-) 564 WP_000780116.1 UbiX family flavin prenyltransferase -
  HPSH169_RS07150 (HPSH169_07275) flgA 1476967..1477623 (-) 657 WP_000697510.1 flagellar basal body P-ring formation chaperone FlgA -
  HPSH169_RS07155 (HPSH169_07280) uvrD 1477620..1479665 (-) 2046 WP_000345163.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21222.87 Da        Isoelectric Point: 9.0940

>NTDB_id=50523 HPSH169_RS07130 WP_001203559.1 1474781..1475356(-) (comFC) [Helicobacter pylori Shi169]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSLKAGAEFVKILQEKG
LITPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKATYGRLRASNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=50523 HPSH169_RS07130 WP_001203559.1 1474781..1475356(-) (comFC) [Helicobacter pylori Shi169]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCTAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGATTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAAGCCACTTACGGGCGTTTAAGGGCTTCTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGAATTTCACTTTCAAAGGCGATGAAAGTTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

96.335

100

0.963
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment