Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPSH169_RS01810 Genome accession   NC_017740
Coordinates   372797..373201 (+) Length   134 a.a.
NCBI ID   WP_000599239.1    Uniprot ID   A0A0E0WB84
Organism   Helicobacter pylori Shi169     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 367797..378201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH169_RS01775 (HPSH169_01825) - 367977..368915 (-) 939 WP_000833939.1 tetraacyldisaccharide 4'-kinase -
  HPSH169_RS01780 (HPSH169_01830) - 368912..369694 (-) 783 WP_001168077.1 NAD+ synthase -
  HPSH169_RS01790 (HPSH169_01835) ilvC 369941..370933 (+) 993 WP_001207780.1 ketol-acid reductoisomerase -
  HPSH169_RS01795 (HPSH169_01840) minD 370952..371758 (+) 807 WP_001029119.1 septum site-determining protein MinD -
  HPSH169_RS01800 (HPSH169_01845) minE 371755..371988 (+) 234 WP_000051411.1 cell division topological specificity factor MinE -
  HPSH169_RS01805 (HPSH169_01850) dprA 372000..372800 (+) 801 WP_000840088.1 DNA-processing protein DprA Machinery gene
  HPSH169_RS01810 (HPSH169_01855) dprB 372797..373201 (+) 405 WP_000599239.1 Holliday junction resolvase RuvX Machinery gene
  HPSH169_RS01815 (HPSH169_01865) - 373435..373803 (+) 369 WP_001059043.1 tetratricopeptide repeat protein -
  HPSH169_RS01820 (HPSH169_01870) - 373991..374329 (+) 339 WP_000699918.1 hypothetical protein -
  HPSH169_RS01825 (HPSH169_01875) - 374313..374879 (+) 567 WP_000037138.1 hypothetical protein -
  HPSH169_RS08320 (HPSH169_01880) - 374891..375109 (+) 219 WP_014661925.1 glycoside hydrolase family protein -
  HPSH169_RS01840 (HPSH169_01890) - 375423..375803 (+) 381 Protein_355 DUF1294 domain-containing protein -
  HPSH169_RS01845 (HPSH169_01895) - 375803..376588 (+) 786 WP_000488067.1 hypothetical protein -
  HPSH169_RS01850 (HPSH169_01900) - 376578..377666 (+) 1089 WP_000426614.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15102.62 Da        Isoelectric Point: 8.8305

>NTDB_id=50516 HPSH169_RS01810 WP_000599239.1 372797..373201(+) (dprB) [Helicobacter pylori Shi169]
MILACDVGLKRIGIATLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACGILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=50516 HPSH169_RS01810 WP_000599239.1 372797..373201(+) (dprB) [Helicobacter pylori Shi169]
GTGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTGGGATCTTGGAACGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0WB84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925

Multiple sequence alignment