Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLDRC3_RS11525 Genome accession   NZ_CP064835
Coordinates   2248080..2248571 (-) Length   163 a.a.
NCBI ID   WP_063283513.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain DRC3     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2243080..2253571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLDRC3_RS11525 (LLDRC3_2208) comX 2248080..2248571 (-) 492 WP_063283513.1 hypothetical protein Regulator
  LLDRC3_RS11530 (LLDRC3_2209) ezrA 2248830..2250560 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  LLDRC3_RS11535 (LLDRC3_2210) tsf 2250746..2251774 (-) 1029 WP_010906339.1 translation elongation factor Ts -
  LLDRC3_RS11540 (LLDRC3_2211) rpsB 2251896..2252663 (-) 768 WP_010906340.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19827.67 Da        Isoelectric Point: 5.8471

>NTDB_id=505123 LLDRC3_RS11525 WP_063283513.1 2248080..2248571(-) (comX) [Lactococcus lactis subsp. lactis strain DRC3]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQNDGHKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=505123 LLDRC3_RS11525 WP_063283513.1 2248080..2248571(-) (comX) [Lactococcus lactis subsp. lactis strain DRC3]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTTTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
ACGATGGTCATAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761