Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPSH169_RS00195 | Genome accession | NC_017740 |
| Coordinates | 33609..33722 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217864.1 | Uniprot ID | A0A0E0W910 |
| Organism | Helicobacter pylori Shi169 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 28609..38722
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH169_RS00170 (HPSH169_00155) | - | 28648..30870 (+) | 2223 | WP_001051543.1 | AAA family ATPase | - |
| HPSH169_RS00175 (HPSH169_00160) | panD | 30860..31210 (+) | 351 | WP_000142289.1 | aspartate 1-decarboxylase | - |
| HPSH169_RS00180 (HPSH169_00165) | - | 31221..31523 (+) | 303 | WP_000347918.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPSH169_RS00185 (HPSH169_00170) | - | 31523..32530 (+) | 1008 | WP_000468454.1 | PDZ domain-containing protein | - |
| HPSH169_RS00190 (HPSH169_00175) | comB6 | 32538..33593 (+) | 1056 | WP_000786690.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPSH169_RS00195 (HPSH169_00180) | comB7 | 33609..33722 (+) | 114 | WP_001217864.1 | hypothetical protein | Machinery gene |
| HPSH169_RS00200 (HPSH169_00185) | comB8 | 33719..34462 (+) | 744 | WP_000660502.1 | type IV secretion system protein | Machinery gene |
| HPSH169_RS00205 (HPSH169_00190) | comB9 | 34462..35418 (+) | 957 | WP_014662053.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPSH169_RS00210 (HPSH169_00195) | comB10 | 35411..36547 (+) | 1137 | WP_001045877.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPSH169_RS00215 (HPSH169_00200) | - | 36617..38029 (+) | 1413 | WP_000694835.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4305.26 Da Isoelectric Point: 9.3572
>NTDB_id=50509 HPSH169_RS00195 WP_001217864.1 33609..33722(+) (comB7) [Helicobacter pylori Shi169]
MRIFFVIIGIMLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIIGIMLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=50509 HPSH169_RS00195 WP_001217864.1 33609..33722(+) (comB7) [Helicobacter pylori Shi169]
ATGAGAATTTTTTTTGTTATTATAGGAATCATGTTATTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATAGGAATCATGTTATTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
89.189 |
100 |
0.892 |