Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HPSH417_RS07110 Genome accession   NC_017739
Coordinates   1478368..1478943 (-) Length   191 a.a.
NCBI ID   WP_001203651.1    Uniprot ID   -
Organism   Helicobacter pylori Shi417     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473368..1483943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH417_RS08885 (HPSH417_07165) - 1475092..1475634 (-) 543 WP_000461696.1 restriction endonuclease subunit S -
  HPSH417_RS08890 (HPSH417_07170) - 1475661..1476299 (-) 639 WP_000580116.1 restriction endonuclease subunit S -
  HPSH417_RS07105 (HPSH417_07175) - 1476296..1478335 (-) 2040 WP_001147678.1 class I SAM-dependent DNA methyltransferase -
  HPSH417_RS07110 (HPSH417_07180) comFC 1478368..1478943 (-) 576 WP_001203651.1 ComF family protein Machinery gene
  HPSH417_RS07115 (HPSH417_07185) tmk 1478931..1479506 (-) 576 WP_000289762.1 dTMP kinase -
  HPSH417_RS07120 (HPSH417_07190) coaD 1479508..1479981 (-) 474 WP_001169286.1 pantetheine-phosphate adenylyltransferase -
  HPSH417_RS07125 (HPSH417_07195) - 1479981..1480544 (-) 564 WP_000780099.1 UbiX family flavin prenyltransferase -
  HPSH417_RS07130 (HPSH417_07205) flgA 1480554..1481210 (-) 657 WP_000697513.1 flagellar basal body P-ring formation chaperone FlgA -
  HPSH417_RS07135 (HPSH417_07210) uvrD 1481207..1483252 (-) 2046 WP_000345162.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21295.88 Da        Isoelectric Point: 8.8864

>NTDB_id=50499 HPSH417_RS07110 WP_001203651.1 1478368..1478943(-) (comFC) [Helicobacter pylori Shi417]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRAINAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEAIKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=50499 HPSH417_RS07110 WP_001203651.1 1478368..1478943(-) (comFC) [Helicobacter pylori Shi417]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTATTAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCATAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

35.938

100

0.361

Multiple sequence alignment