Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   ITP52_RS08615 Genome accession   NZ_CP064818
Coordinates   1751388..1751786 (+) Length   132 a.a.
NCBI ID   WP_021481824.1    Uniprot ID   -
Organism   Bacillus subtilis strain SH1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746388..1756786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITP52_RS08590 (ITP52_08590) hxlR 1747123..1747485 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  ITP52_RS08595 (ITP52_08595) hxlA 1747718..1748350 (+) 633 WP_041850680.1 3-hexulose-6-phosphate synthase -
  ITP52_RS08600 (ITP52_08600) hxlB 1748356..1748913 (+) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  ITP52_RS08605 (ITP52_08605) tlpC 1749023..1750744 (+) 1722 WP_021481821.1 methyl-accepting chemotaxis protein TlpC -
  ITP52_RS08610 (ITP52_08610) nucA/comI 1750912..1751361 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  ITP52_RS08615 (ITP52_08615) nin/comJ 1751388..1751786 (+) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  ITP52_RS08620 (ITP52_08620) bglC 1751823..1753256 (-) 1434 WP_038828490.1 6-phospho-beta-glucosidase -
  ITP52_RS08625 (ITP52_08625) yckD 1753410..1753742 (-) 333 WP_003246247.1 YckD family protein -
  ITP52_RS08630 (ITP52_08630) yckC 1753824..1754279 (-) 456 WP_024572178.1 RDD family protein -
  ITP52_RS08635 (ITP52_08635) - 1754299..1754496 (-) 198 WP_120363256.1 hypothetical protein -
  ITP52_RS08640 (ITP52_08640) yckB 1754657..1755520 (+) 864 WP_080121173.1 transporter substrate-binding domain-containing protein -
  ITP52_RS08645 (ITP52_08645) yckA 1755530..1756210 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14962.93 Da        Isoelectric Point: 4.8991

>NTDB_id=504894 ITP52_RS08615 WP_021481824.1 1751388..1751786(+) (nin/comJ) [Bacillus subtilis strain SH1]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=504894 ITP52_RS08615 WP_021481824.1 1751388..1751786(+) (nin/comJ) [Bacillus subtilis strain SH1]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGTTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992