Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KQ252_RS00480 Genome accession   NZ_CP076801
Coordinates   95120..95755 (+) Length   211 a.a.
NCBI ID   WP_045901488.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC25604     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 90120..100755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS00455 (KQ252_00455) - 90960..91973 (+) 1014 WP_001096100.1 aminoglycoside phosphotransferase family protein -
  KQ252_RS00460 (KQ252_00460) murU 91973..92662 (+) 690 WP_000646465.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  KQ252_RS00465 (KQ252_00465) rsmG 92750..93382 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  KQ252_RS00470 (KQ252_00470) - 93404..94186 (+) 783 WP_000057212.1 ParA family protein -
  KQ252_RS00475 (KQ252_00475) - 94183..95070 (+) 888 WP_000023431.1 ParB/RepB/Spo0J family partition protein -
  KQ252_RS00480 (KQ252_00480) exbB 95120..95755 (+) 636 WP_045901488.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KQ252_RS00485 (KQ252_00485) - 95771..96199 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  KQ252_RS00490 (KQ252_00490) msbA 96196..97923 (+) 1728 WP_001070729.1 lipid A export permease/ATP-binding protein MsbA -
  KQ252_RS00495 (KQ252_00495) lpxK 97926..98936 (+) 1011 WP_002068489.1 tetraacyldisaccharide 4'-kinase -
  KQ252_RS00500 (KQ252_00500) kdsB 98946..99707 (+) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KQ252_RS00505 (KQ252_00505) - 99719..100699 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23214.14 Da        Isoelectric Point: 6.4861

>NTDB_id=504731 KQ252_RS00480 WP_045901488.1 95120..95755(+) (exbB) [Acinetobacter baumannii strain UC25604]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAILALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=504731 KQ252_RS00480 WP_045901488.1 95120..95755(+) (exbB) [Acinetobacter baumannii strain UC25604]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGTACAGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCGCAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTTTATTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCAGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCTTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

42.932

90.521

0.389