Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Azoinq_RS10505 Genome accession   NZ_CP064782
Coordinates   2292970..2294325 (+) Length   451 a.a.
NCBI ID   WP_216129311.1    Uniprot ID   A0A975SLV9
Organism   Azospira inquinata strain Azo-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2287970..2299325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Azoinq_RS10475 (Azoinq_10465) coaBC 2288439..2289683 (-) 1245 WP_408627064.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  Azoinq_RS10480 (Azoinq_10470) radC 2289737..2290414 (+) 678 WP_216129320.1 DNA repair protein RadC -
  Azoinq_RS10485 (Azoinq_10475) rpmB 2290582..2290815 (+) 234 WP_216129318.1 50S ribosomal protein L28 -
  Azoinq_RS10490 (Azoinq_10480) rpmG 2290827..2290982 (+) 156 WP_216129316.1 50S ribosomal protein L33 -
  Azoinq_RS10495 (Azoinq_10485) - 2291146..2291370 (+) 225 WP_216129315.1 PP0621 family protein -
  Azoinq_RS10500 (Azoinq_10490) - 2291360..2292982 (+) 1623 WP_232368461.1 nitrogen regulation protein NR(II) -
  Azoinq_RS10505 (Azoinq_10495) pilR 2292970..2294325 (+) 1356 WP_216129311.1 sigma-54 dependent transcriptional regulator Regulator
  Azoinq_RS10510 (Azoinq_10500) ampD 2294327..2294956 (+) 630 WP_216129309.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  Azoinq_RS10515 (Azoinq_10505) - 2295422..2296393 (+) 972 WP_216129307.1 hypothetical protein -
  Azoinq_RS10520 (Azoinq_10510) - 2296621..2297781 (-) 1161 WP_216129304.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48470.31 Da        Isoelectric Point: 4.9953

>NTDB_id=504731 Azoinq_RS10505 WP_216129311.1 2292970..2294325(+) (pilR) [Azospira inquinata strain Azo-3]
MSVVKGERRSRGELQRVLVVDDEADIRELLDLTLSRMGLAADCAGTVGEARELLAAHPYQLCLTDMRLPDGEGLELVRLI
GEHYSATPVAVITAFGSAENAVAALKAGAFDYLAKPVALDQLRSLIKSALEIPGQPAALAAEGGLIGASRAIGEVREMIG
KLARSQAPVYISGESGSGKELAARLIHQQSNRSEGPFVPVNCGAIPENLMESEFFGYRKGAFTGAEGDREGFFQAASGGT
LFLDEVADLPLSMQVKLLRALQEKKVRRIGATGEEAVDVRVICATHKDLQAGVAAGSFRQDLYYRLNVIELFMPPLRERP
EDIPDLAIAILARLAGSGQTPHLDASAMTALSRYAFPGNVRELENVLERALALHNGQAILADDLRLSRDDGEAPEGPDLA
AETLDAYLARVERQAIGEAVAKTQGNRTAAARLLGVTFRSLRYRMERLGMD

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=504731 Azoinq_RS10505 WP_216129311.1 2292970..2294325(+) (pilR) [Azospira inquinata strain Azo-3]
ATGTCAGTCGTAAAAGGGGAACGGCGTTCCCGGGGAGAATTGCAGCGGGTGCTGGTGGTGGATGATGAGGCGGACATCCG
GGAGCTGCTGGACCTGACCCTGTCCCGCATGGGCTTGGCGGCGGATTGCGCCGGTACGGTGGGGGAAGCCCGGGAGCTGT
TGGCCGCCCATCCTTACCAGCTATGCCTCACGGACATGCGTTTGCCCGACGGGGAAGGCCTGGAGCTGGTGCGCCTCATC
GGGGAGCACTACAGCGCCACGCCGGTGGCGGTGATCACCGCCTTTGGCAGTGCCGAAAACGCCGTGGCGGCCCTGAAGGC
CGGGGCCTTCGATTACCTGGCCAAACCCGTGGCCCTGGATCAGCTGCGCAGCCTGATTAAATCAGCCCTGGAAATTCCGG
GGCAGCCTGCCGCCCTGGCGGCGGAAGGGGGCCTGATCGGCGCTTCCCGAGCCATTGGGGAAGTGCGGGAAATGATCGGC
AAACTGGCCCGCAGTCAGGCCCCGGTCTACATTTCCGGGGAATCGGGGAGCGGCAAGGAACTGGCCGCCCGCCTTATCCA
CCAGCAGAGCAACCGGTCCGAGGGGCCCTTTGTGCCGGTAAATTGCGGCGCCATTCCGGAAAATCTCATGGAAAGCGAGT
TTTTCGGCTACCGCAAAGGAGCGTTCACCGGGGCGGAAGGGGACCGGGAGGGCTTTTTCCAGGCCGCCAGCGGGGGCACC
CTGTTCCTCGACGAGGTGGCGGATTTGCCCCTCTCCATGCAGGTCAAGCTGCTGCGGGCCTTGCAGGAGAAAAAAGTGCG
CCGCATCGGCGCTACCGGGGAAGAGGCGGTGGATGTGCGGGTGATTTGCGCCACCCACAAGGATTTGCAGGCCGGGGTGG
CGGCGGGGAGCTTCCGCCAGGATCTCTATTACCGGCTCAATGTGATTGAGCTATTCATGCCCCCCCTGCGGGAGCGACCG
GAGGACATTCCGGATTTAGCCATCGCCATCCTGGCCCGTCTGGCCGGGTCGGGCCAAACGCCCCATCTGGACGCCAGCGC
CATGACAGCCCTGAGCCGCTATGCCTTTCCCGGCAATGTGCGGGAGCTGGAAAACGTGCTGGAGCGGGCCTTGGCCCTGC
ACAACGGCCAGGCCATTCTGGCCGACGATTTGCGCCTTTCCCGGGACGACGGGGAGGCGCCGGAAGGCCCGGACCTGGCA
GCGGAAACCCTGGATGCCTATCTGGCCCGGGTGGAGCGCCAGGCTATCGGGGAGGCGGTGGCCAAAACCCAGGGCAACCG
CACGGCGGCGGCCCGGCTGCTGGGGGTGACCTTCCGTTCCCTGCGCTACCGCATGGAACGCCTGGGGATGGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(17-126)

Sigma-54 interaction domain (Sigma54_activat)

(145-311)

Bacterial regulatory protein, Fis family (HTH_8)

(408-447)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.312

98.004

0.601
  pilR Acinetobacter baumannii strain A118

47.059

100

0.479