Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IV492_RS08025 Genome accession   NZ_CP064780
Coordinates   1658236..1659687 (-) Length   483 a.a.
NCBI ID   WP_011258365.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain DY89031(J18)     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1653236..1664687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IV492_RS08000 - 1653478..1654113 (+) 636 WP_233282869.1 hypothetical protein -
  IV492_RS08005 - 1654083..1655609 (+) 1527 WP_011258362.1 membrane protein -
  IV492_RS08010 pilB 1655644..1657377 (+) 1734 WP_011408072.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IV492_RS23640 - 1657386..1657646 (-) 261 WP_011408073.1 Fic family protein -
  IV492_RS23645 - 1657734..1657895 (-) 162 WP_153296778.1 hypothetical protein -
  IV492_RS08020 - 1657957..1658163 (-) 207 WP_027703281.1 YhfG family protein -
  IV492_RS08025 pilR 1658236..1659687 (-) 1452 WP_011258365.1 sigma-54 dependent transcriptional regulator Regulator
  IV492_RS08030 - 1659958..1661571 (-) 1614 WP_011258366.1 HAMP domain-containing sensor histidine kinase -
  IV492_RS08035 sucC 1661805..1662974 (+) 1170 WP_011258367.1 ADP-forming succinate--CoA ligase subunit beta -
  IV492_RS08040 sucD 1662999..1663874 (+) 876 WP_011258368.1 succinate--CoA ligase subunit alpha -
  IV492_RS08045 - 1664194..1664490 (+) 297 WP_011408075.1 hypothetical protein -

Sequence

Protein


Download         Length: 483 a.a.        Molecular weight: 52462.22 Da        Isoelectric Point: 6.8290

>NTDB_id=504681 IV492_RS08025 WP_011258365.1 1658236..1659687(-) (pilR) [Xanthomonas oryzae pv. oryzae strain DY89031(J18)]
MRRAPLDNCRLSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide


Download         Length: 1452 bp        

>NTDB_id=504681 IV492_RS08025 WP_011258365.1 1658236..1659687(-) (pilR) [Xanthomonas oryzae pv. oryzae strain DY89031(J18)]
TTGCGCCGCGCCCCACTCGACAATTGTCGACTATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCGGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(440-480)

Sigma-54 interaction domain (Sigma54_activat)

(161-326)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.987

95.652

0.602
  pilR Acinetobacter baumannii strain A118

48.268

95.652

0.462