Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HCD_RS04365 | Genome accession | NC_017735 |
| Coordinates | 897818..898393 (-) | Length | 191 a.a. |
| NCBI ID | WP_014659382.1 | Uniprot ID | I0ESF6 |
| Organism | Helicobacter cetorum MIT 99-5656 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 892818..903393
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCD_RS09460 (HCD_04285) | - | 892840..893106 (-) | 267 | WP_014659378.1 | hypothetical protein | - |
| HCD_RS04350 (HCD_04290) | - | 894507..895061 (-) | 555 | WP_014659379.1 | type II restriction endonuclease | - |
| HCD_RS04355 (HCD_04295) | - | 895088..895687 (-) | 600 | WP_014659380.1 | type I restriction endonuclease subunit S | - |
| HCD_RS04360 (HCD_04300) | - | 895744..897786 (-) | 2043 | WP_014659381.1 | N-6 DNA methylase | - |
| HCD_RS04365 (HCD_04305) | comFC | 897818..898393 (-) | 576 | WP_014659382.1 | ComF family protein | Machinery gene |
| HCD_RS04370 (HCD_04310) | tmk | 898372..898956 (-) | 585 | WP_014659383.1 | dTMP kinase | - |
| HCD_RS04375 (HCD_04315) | coaD | 898957..899430 (-) | 474 | WP_014659384.1 | pantetheine-phosphate adenylyltransferase | - |
| HCD_RS04380 (HCD_04320) | - | 899430..899996 (-) | 567 | WP_014659385.1 | UbiX family flavin prenyltransferase | - |
| HCD_RS04385 (HCD_04325) | flgA | 900007..900663 (-) | 657 | WP_014659386.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HCD_RS04390 (HCD_04330) | - | 900660..902687 (-) | 2028 | WP_014659387.1 | ATP-dependent helicase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21572.19 Da Isoelectric Point: 9.5631
>NTDB_id=50452 HCD_RS04365 WP_014659382.1 897818..898393(-) (comFC) [Helicobacter cetorum MIT 99-5656]
MRCLTCLKLSFKPLCQSCLNDLPLQLKVRVLEGVSVYSFYAYSEVEELIKSKYSLIGSRLLFLLSQKASKEFLKILKEKG
LNTTLYGIAVDDRVKSFYSHSAVLLKGFCKNNLKATYGNLRATNFITYAGKSLEFRTNNPKNFTFKGDKTLDYFLLDDII
TTGTTLKEAISYLKNLDIKVHFAIALADASD
MRCLTCLKLSFKPLCQSCLNDLPLQLKVRVLEGVSVYSFYAYSEVEELIKSKYSLIGSRLLFLLSQKASKEFLKILKEKG
LNTTLYGIAVDDRVKSFYSHSAVLLKGFCKNNLKATYGNLRATNFITYAGKSLEFRTNNPKNFTFKGDKTLDYFLLDDII
TTGTTLKEAISYLKNLDIKVHFAIALADASD
Nucleotide
Download Length: 576 bp
>NTDB_id=50452 HCD_RS04365 WP_014659382.1 897818..898393(-) (comFC) [Helicobacter cetorum MIT 99-5656]
ATGCGTTGTCTCACTTGCTTAAAACTCTCTTTCAAACCCCTTTGCCAAAGTTGCTTGAATGACTTACCCCTACAATTAAA
AGTAAGAGTCTTAGAAGGCGTGAGCGTGTATAGCTTTTATGCCTATAGCGAAGTAGAAGAATTGATTAAAAGCAAGTATT
CTTTAATAGGCTCACGCCTTTTATTTTTGCTCTCTCAAAAAGCGAGCAAGGAATTTCTAAAAATTTTAAAAGAAAAGGGT
TTAAACACCACCCTTTATGGAATCGCTGTTGATGACAGAGTGAAGTCTTTTTACTCACACTCCGCCGTGCTTTTAAAAGG
TTTTTGTAAAAACAACTTAAAAGCCACTTATGGGAATTTAAGGGCAACTAATTTTATTACTTACGCAGGAAAAAGCCTAG
AATTTCGCACAAACAACCCAAAGAATTTCACATTCAAAGGCGATAAAACTTTAGATTACTTCTTGCTAGATGATATTATC
ACCACCGGCACAACTCTTAAAGAAGCAATTAGCTATCTTAAAAATTTAGATATAAAAGTGCATTTTGCTATCGCACTAGC
TGATGCGAGCGATTAA
ATGCGTTGTCTCACTTGCTTAAAACTCTCTTTCAAACCCCTTTGCCAAAGTTGCTTGAATGACTTACCCCTACAATTAAA
AGTAAGAGTCTTAGAAGGCGTGAGCGTGTATAGCTTTTATGCCTATAGCGAAGTAGAAGAATTGATTAAAAGCAAGTATT
CTTTAATAGGCTCACGCCTTTTATTTTTGCTCTCTCAAAAAGCGAGCAAGGAATTTCTAAAAATTTTAAAAGAAAAGGGT
TTAAACACCACCCTTTATGGAATCGCTGTTGATGACAGAGTGAAGTCTTTTTACTCACACTCCGCCGTGCTTTTAAAAGG
TTTTTGTAAAAACAACTTAAAAGCCACTTATGGGAATTTAAGGGCAACTAATTTTATTACTTACGCAGGAAAAAGCCTAG
AATTTCGCACAAACAACCCAAAGAATTTCACATTCAAAGGCGATAAAACTTTAGATTACTTCTTGCTAGATGATATTATC
ACCACCGGCACAACTCTTAAAGAAGCAATTAGCTATCTTAAAAATTTAGATATAAAAGTGCATTTTGCTATCGCACTAGC
TGATGCGAGCGATTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
80.105 |
100 |
0.801 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
35.938 |
100 |
0.361 |