Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | HCD_RS00115 | Genome accession | NC_017735 |
| Coordinates | 20049..21095 (-) | Length | 348 a.a. |
| NCBI ID | WP_014658580.1 | Uniprot ID | I0EQ32 |
| Organism | Helicobacter cetorum MIT 99-5656 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 15049..26095
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCD_RS00095 | - | 15670..17087 (-) | 1418 | Protein_15 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HCD_RS00100 (HCD_00075) | comB10 | 17127..18260 (-) | 1134 | WP_014658576.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HCD_RS00105 (HCD_00080) | comB9 | 18257..19186 (-) | 930 | WP_014658577.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HCD_RS00110 (HCD_00085) | comB8 | 19186..19923 (-) | 738 | WP_014658578.1 | type IV secretion system protein | Machinery gene |
| HCD_RS09485 (HCD_00090) | comB7 | 19920..20033 (-) | 114 | WP_014658579.1 | hypothetical protein | Machinery gene |
| HCD_RS00115 (HCD_00095) | comB6 | 20049..21095 (-) | 1047 | WP_014658580.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HCD_RS00120 (HCD_00100) | - | 21095..22090 (-) | 996 | WP_014658581.1 | PDZ domain-containing protein | - |
| HCD_RS00125 (HCD_00105) | - | 22090..22383 (-) | 294 | WP_014658582.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HCD_RS00130 (HCD_00110) | panD | 22386..22742 (-) | 357 | WP_014658583.1 | aspartate 1-decarboxylase | - |
| HCD_RS00135 (HCD_00115) | - | 22732..24945 (-) | 2214 | WP_014658584.1 | AAA family ATPase | - |
| HCD_RS00140 (HCD_00120) | - | 24945..25214 (-) | 270 | WP_041594852.1 | ATP-dependent Clp protease adaptor ClpS | - |
| HCD_RS00145 (HCD_00125) | - | 25306..25719 (-) | 414 | WP_014658586.1 | universal stress protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 39611.81 Da Isoelectric Point: 9.0251
>NTDB_id=50444 HCD_RS00115 WP_014658580.1 20049..21095(-) (comB6) [Helicobacter cetorum MIT 99-5656]
MKNNAYEIILSWFITPLTAILGRFAEFFLYTLHAQFVFNSVVALAFMLFAYKSLKEQNLFSSSTLLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFILPNMLTQALTQSLATFSDYTLSIDFIFNHGFYALSFISDLSHKEVGVWLILSVLQALFLSVL
FAIIILVYLEVHVWCSLGVLLLAFGFFKSWRSVLIMCLKKCLALGFYKPFLLVVGFLNVSVTQALIKAHMQEQQDLSLLL
VVALFLCCALIIGVPFFINALFRTQNSLKETYKLATNLGTNLNQNALNSLRYITTQSNVSHSTTESKEQISPTHSPIFKV
ETTPLDVKIPNFKQKKVKKDTIKPQNEI
MKNNAYEIILSWFITPLTAILGRFAEFFLYTLHAQFVFNSVVALAFMLFAYKSLKEQNLFSSSTLLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFILPNMLTQALTQSLATFSDYTLSIDFIFNHGFYALSFISDLSHKEVGVWLILSVLQALFLSVL
FAIIILVYLEVHVWCSLGVLLLAFGFFKSWRSVLIMCLKKCLALGFYKPFLLVVGFLNVSVTQALIKAHMQEQQDLSLLL
VVALFLCCALIIGVPFFINALFRTQNSLKETYKLATNLGTNLNQNALNSLRYITTQSNVSHSTTESKEQISPTHSPIFKV
ETTPLDVKIPNFKQKKVKKDTIKPQNEI
Nucleotide
Download Length: 1047 bp
>NTDB_id=50444 HCD_RS00115 WP_014658580.1 20049..21095(-) (comB6) [Helicobacter cetorum MIT 99-5656]
ATGAAAAACAATGCTTATGAGATTATCCTTTCTTGGTTTATCACACCGCTTACAGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTACATGCACAATTTGTTTTTAATAGCGTGGTCGCTTTGGCATTCATGCTTTTTGCTTATAAAAGCT
TAAAAGAACAGAACTTATTCAGCTCTAGCACGCTCTTAGAAGCGTTGTTGTTTGTAGGATTTTTTGCACTCTTTAACTAC
GCTTTAAAAAACCCCATGCACTTTTATGAATTTTTTCAAAATGCCATTTTTATTCTACCTAACATGCTCACACAAGCCCT
AACTCAGAGCTTGGCAACTTTTTCAGATTACACGCTTTCAATAGATTTTATCTTCAATCATGGTTTTTATGCTCTTAGTT
TTATCAGTGATTTGAGCCATAAAGAAGTGGGTGTTTGGCTCATCTTAAGCGTTTTACAAGCTCTTTTTTTAAGCGTGCTG
TTTGCAATCATTATCTTAGTTTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTATTACTTTTAGCCTTTGGGTTTTT
CAAATCGTGGCGAAGCGTTTTAATTATGTGTCTTAAAAAATGCCTAGCCCTTGGATTTTACAAGCCTTTTTTGTTAGTGG
TGGGGTTTTTGAATGTGTCAGTTACTCAGGCTTTAATCAAAGCTCATATGCAAGAACAACAAGACTTAAGCCTTTTATTA
GTGGTGGCGTTATTTTTGTGCTGTGCATTAATTATAGGCGTGCCTTTTTTCATTAACGCCCTTTTTAGAACACAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTAGGCACCAATCTCAATCAAAACGCCCTTAATTCGTTGCGATACATAA
CCACGCAATCAAATGTTTCTCACTCAACAACTGAGAGCAAGGAACAAATAAGCCCTACGCATTCCCCCATCTTCAAGGTA
GAAACCACTCCATTAGATGTAAAAATTCCCAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAAGCCACAAAATGA
AATTTAA
ATGAAAAACAATGCTTATGAGATTATCCTTTCTTGGTTTATCACACCGCTTACAGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTACATGCACAATTTGTTTTTAATAGCGTGGTCGCTTTGGCATTCATGCTTTTTGCTTATAAAAGCT
TAAAAGAACAGAACTTATTCAGCTCTAGCACGCTCTTAGAAGCGTTGTTGTTTGTAGGATTTTTTGCACTCTTTAACTAC
GCTTTAAAAAACCCCATGCACTTTTATGAATTTTTTCAAAATGCCATTTTTATTCTACCTAACATGCTCACACAAGCCCT
AACTCAGAGCTTGGCAACTTTTTCAGATTACACGCTTTCAATAGATTTTATCTTCAATCATGGTTTTTATGCTCTTAGTT
TTATCAGTGATTTGAGCCATAAAGAAGTGGGTGTTTGGCTCATCTTAAGCGTTTTACAAGCTCTTTTTTTAAGCGTGCTG
TTTGCAATCATTATCTTAGTTTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTATTACTTTTAGCCTTTGGGTTTTT
CAAATCGTGGCGAAGCGTTTTAATTATGTGTCTTAAAAAATGCCTAGCCCTTGGATTTTACAAGCCTTTTTTGTTAGTGG
TGGGGTTTTTGAATGTGTCAGTTACTCAGGCTTTAATCAAAGCTCATATGCAAGAACAACAAGACTTAAGCCTTTTATTA
GTGGTGGCGTTATTTTTGTGCTGTGCATTAATTATAGGCGTGCCTTTTTTCATTAACGCCCTTTTTAGAACACAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTAGGCACCAATCTCAATCAAAACGCCCTTAATTCGTTGCGATACATAA
CCACGCAATCAAATGTTTCTCACTCAACAACTGAGAGCAAGGAACAAATAAGCCCTACGCATTCCCCCATCTTCAAGGTA
GAAACCACTCCATTAGATGTAAAAATTCCCAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAAGCCACAAAATGA
AATTTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
82.72 |
100 |
0.839 |