Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPB14_RS06515 Genome accession   NC_017733
Coordinates   1343528..1344841 (-) Length   437 a.a.
NCBI ID   WP_000653582.1    Uniprot ID   -
Organism   Helicobacter pylori HUP-B14     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338528..1349841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB14_RS06485 (HPB14_06485) nadC 1338991..1339812 (-) 822 WP_000405972.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPB14_RS06490 (HPB14_06490) nadA 1339812..1340822 (-) 1011 WP_001141827.1 quinolinate synthase NadA -
  HPB14_RS06495 (HPB14_06495) - 1340812..1341615 (-) 804 WP_000226201.1 phosphatidylserine decarboxylase -
  HPB14_RS06500 (HPB14_06500) - 1341609..1342115 (-) 507 WP_000953090.1 DUF6115 domain-containing protein -
  HPB14_RS06505 (HPB14_06505) - 1342128..1342622 (-) 495 WP_014658527.1 hypothetical protein -
  HPB14_RS06510 (HPB14_06510) mqnP 1342615..1343457 (-) 843 WP_229018042.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPB14_RS06515 (HPB14_06515) comEC/comE3 1343528..1344841 (-) 1314 WP_000653582.1 ComEC/Rec2 family competence protein Machinery gene
  HPB14_RS06520 (HPB14_06520) - 1344838..1346304 (-) 1467 WP_000349724.1 replicative DNA helicase -
  HPB14_RS06525 (HPB14_06525) - 1346315..1347709 (-) 1395 WP_000953995.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPB14_RS06530 (HPB14_06530) crdS 1347712..1348914 (-) 1203 WP_080011984.1 copper-sensing histidine kinase CrdS -
  HPB14_RS06535 (HPB14_06535) crdR 1348880..1349521 (-) 642 WP_001169767.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50389.51 Da        Isoelectric Point: 9.9068

>NTDB_id=50437 HPB14_RS06515 WP_000653582.1 1343528..1344841(-) (comEC/comE3) [Helicobacter pylori HUP-B14]
MKDKTFQGAFELLSTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLMRKHNFKSRLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSMSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFLMRSFQVISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHILSMPLTIPTISISSPLWLLGAHLFLT
IVSVRFFKVYLSMNVLSMGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=50437 HPB14_RS06515 WP_000653582.1 1343528..1344841(-) (comEC/comE3) [Helicobacter pylori HUP-B14]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCTAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTGATGCGAAAACACAATTTCAAATCGCGTT
TGCGCCATTTCATTGATAGCGCTCATTCCAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
AAGCATGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTGTTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGAATCTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTAATGCGATCGTTTCAAGTCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTATTGGATCATA
TTCTAAGCATGCCTTTAACCATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGCGCATTTGTTTTTAACG
ATTGTGAGCGTGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTAAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941

Multiple sequence alignment