Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | HPB14_RS01650 | Genome accession | NC_017733 |
| Coordinates | 334809..335213 (+) | Length | 134 a.a. |
| NCBI ID | WP_000599212.1 | Uniprot ID | - |
| Organism | Helicobacter pylori HUP-B14 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 329809..340213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPB14_RS01615 (HPB14_01615) | - | 329982..330920 (-) | 939 | WP_000833853.1 | tetraacyldisaccharide 4'-kinase | - |
| HPB14_RS01620 (HPB14_01620) | - | 330917..331699 (-) | 783 | WP_001168290.1 | NAD+ synthase | - |
| HPB14_RS01630 (HPB14_01625) | ilvC | 331948..332940 (+) | 993 | WP_001207746.1 | ketol-acid reductoisomerase | - |
| HPB14_RS01635 (HPB14_01630) | minD | 332964..333770 (+) | 807 | WP_001019049.1 | septum site-determining protein MinD | - |
| HPB14_RS01640 (HPB14_01635) | minE | 333767..334000 (+) | 234 | WP_000051414.1 | cell division topological specificity factor MinE | - |
| HPB14_RS01645 (HPB14_01640) | dprA | 334012..334812 (+) | 801 | WP_000835216.1 | DNA-processing protein DprA | Machinery gene |
| HPB14_RS01650 (HPB14_01645) | dprB | 334809..335213 (+) | 405 | WP_000599212.1 | Holliday junction resolvase RuvX | Machinery gene |
| HPB14_RS01655 (HPB14_01650) | - | 335346..336017 (+) | 672 | WP_041199468.1 | cysteine-rich Sel1 repeat protein | - |
| HPB14_RS01660 (HPB14_01655) | - | 336132..336470 (+) | 339 | WP_000699906.1 | hypothetical protein | - |
| HPB14_RS01665 (HPB14_01660) | - | 336454..337014 (+) | 561 | WP_000038897.1 | hypothetical protein | - |
| HPB14_RS01670 (HPB14_01665) | - | 337160..338041 (-) | 882 | WP_001117143.1 | RluA family pseudouridine synthase | - |
| HPB14_RS01675 (HPB14_01670) | recJ | 338041..339591 (-) | 1551 | WP_000810698.1 | single-stranded-DNA-specific exonuclease RecJ | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15265.76 Da Isoelectric Point: 8.2822
>NTDB_id=50432 HPB14_RS01650 WP_000599212.1 334809..335213(+) (dprB) [Helicobacter pylori HUP-B14]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPSENYADTNIRIEHFIKLVDFKGE
IVFINEDSSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPSENYADTNIRIEHFIKLVDFKGE
IVFINEDSSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
Nucleotide
Download Length: 405 bp
>NTDB_id=50432 HPB14_RS01650 WP_000599212.1 334809..335213(+) (dprB) [Helicobacter pylori HUP-B14]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TTGGCAAGCCTAGTGAAAATTATGCGGATACGAATATCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGCTCCAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TTGGCAAGCCTAGTGAAAATTATGCGGATACGAATATCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGCTCCAGCATAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
95.522 |
100 |
0.955 |