Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPB14_RS00105 | Genome accession | NC_017733 |
| Coordinates | 13875..14138 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584956.1 | Uniprot ID | - |
| Organism | Helicobacter pylori HUP-B14 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 8875..19138
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPB14_RS00080 (HPB14_00050) | groES | 9162..9518 (-) | 357 | WP_000671934.1 | co-chaperone GroES | - |
| HPB14_RS00085 (HPB14_00055) | dnaG | 9804..11483 (+) | 1680 | WP_014658393.1 | DNA primase | - |
| HPB14_RS00090 (HPB14_00060) | - | 11480..12532 (+) | 1053 | WP_000809466.1 | MnmA/TRMU family protein | - |
| HPB14_RS00095 (HPB14_00065) | - | 12622..13449 (+) | 828 | WP_001154872.1 | DUF5718 family protein | - |
| HPB14_RS00100 (HPB14_00070) | comB2 | 13594..13875 (+) | 282 | WP_001272686.1 | TrbC/VirB2 family protein | Machinery gene |
| HPB14_RS00105 (HPB14_00075) | comB3 | 13875..14138 (+) | 264 | WP_000584956.1 | hypothetical protein | Machinery gene |
| HPB14_RS00110 (HPB14_00080) | comB4 | 14140..16503 (+) | 2364 | WP_000890498.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPB14_RS00115 (HPB14_00085) | - | 16801..18141 (+) | 1341 | WP_014658394.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10006.08 Da Isoelectric Point: 9.5290
>NTDB_id=50422 HPB14_RS00105 WP_000584956.1 13875..14138(+) (comB3) [Helicobacter pylori HUP-B14]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=50422 HPB14_RS00105 WP_000584956.1 13875..14138(+) (comB3) [Helicobacter pylori HUP-B14]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
100 |
100 |
1 |