Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPB14_RS00100 Genome accession   NC_017733
Coordinates   13594..13875 (+) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori HUP-B14     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8594..18875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB14_RS00080 (HPB14_00050) groES 9162..9518 (-) 357 WP_000671934.1 co-chaperone GroES -
  HPB14_RS00085 (HPB14_00055) dnaG 9804..11483 (+) 1680 WP_014658393.1 DNA primase -
  HPB14_RS00090 (HPB14_00060) - 11480..12532 (+) 1053 WP_000809466.1 MnmA/TRMU family protein -
  HPB14_RS00095 (HPB14_00065) - 12622..13449 (+) 828 WP_001154872.1 DUF5718 family protein -
  HPB14_RS00100 (HPB14_00070) comB2 13594..13875 (+) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  HPB14_RS00105 (HPB14_00075) comB3 13875..14138 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HPB14_RS00110 (HPB14_00080) comB4 14140..16503 (+) 2364 WP_000890498.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPB14_RS00115 (HPB14_00085) - 16801..18141 (+) 1341 WP_014658394.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=50421 HPB14_RS00100 WP_001272686.1 13594..13875(+) (comB2) [Helicobacter pylori HUP-B14]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=50421 HPB14_RS00100 WP_001272686.1 13594..13875(+) (comB2) [Helicobacter pylori HUP-B14]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTGGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment