Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KQ217_RS07365 Genome accession   NZ_CP076706
Coordinates   1506114..1506851 (+) Length   245 a.a.
NCBI ID   WP_216803802.1    Uniprot ID   -
Organism   Escherichia coli O170:H18 strain CFIAFB20120266     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501114..1511851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ217_RS07350 (KQ217_07350) clpC 1501568..1504141 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  KQ217_RS07355 (KQ217_07355) yfiH 1504271..1505002 (-) 732 WP_000040144.1 purine nucleoside phosphorylase YfiH -
  KQ217_RS07360 (KQ217_07360) rluD 1504999..1505979 (-) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KQ217_RS07365 (KQ217_07365) comL 1506114..1506851 (+) 738 WP_216803802.1 outer membrane protein assembly factor BamD Machinery gene
  KQ217_RS07370 (KQ217_07370) raiA 1507121..1507462 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KQ217_RS07375 (KQ217_07375) pheL 1507566..1507613 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KQ217_RS07380 (KQ217_07380) pheA 1507712..1508872 (+) 1161 WP_000200125.1 bifunctional chorismate mutase/prephenate dehydratase -
  KQ217_RS07385 (KQ217_07385) tyrA 1508915..1510036 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KQ217_RS07390 (KQ217_07390) aroF 1510047..1511117 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KQ217_RS07395 (KQ217_07395) yfiL 1511328..1511693 (+) 366 WP_001296308.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27901.46 Da        Isoelectric Point: 5.8539

>NTDB_id=504208 KQ217_RS07365 WP_216803802.1 1506114..1506851(+) (comL) [Escherichia coli O170:H18 strain CFIAFB20120266]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQEFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=504208 KQ217_RS07365 WP_216803802.1 1506114..1506851(+) (comL) [Escherichia coli O170:H18 strain CFIAFB20120266]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGAGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376