Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KQ221_RS05890 Genome accession   NZ_CP076704
Coordinates   1198189..1198926 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O8:H28 strain BMH-17-0027     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1193189..1203926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ221_RS05860 (KQ221_05860) yfiL 1193347..1193712 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KQ221_RS05865 (KQ221_05865) aroF 1193922..1194992 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KQ221_RS05870 (KQ221_05870) tyrA 1195003..1196124 (+) 1122 WP_000225202.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KQ221_RS05875 (KQ221_05875) pheA 1196167..1197327 (-) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  KQ221_RS05880 (KQ221_05880) pheL 1197426..1197473 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KQ221_RS05885 (KQ221_05885) raiA 1197577..1197918 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KQ221_RS05890 (KQ221_05890) comL 1198189..1198926 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KQ221_RS05895 (KQ221_05895) rluD 1199061..1200041 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KQ221_RS05900 (KQ221_05900) yfiH 1200038..1200769 (+) 732 WP_000040128.1 purine nucleoside phosphorylase YfiH -
  KQ221_RS05905 (KQ221_05905) clpC 1200899..1203472 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=504137 KQ221_RS05890 WP_000197686.1 1198189..1198926(-) (comL) [Escherichia coli O8:H28 strain BMH-17-0027]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=504137 KQ221_RS05890 WP_000197686.1 1198189..1198926(-) (comL) [Escherichia coli O8:H28 strain BMH-17-0027]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376