Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IVG45_RS19780 Genome accession   NZ_CP064653
Coordinates   4227190..4228536 (+) Length   448 a.a.
NCBI ID   WP_196435476.1    Uniprot ID   A0A7T0JMA5
Organism   Methylomonas sp. LL1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4222190..4233536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVG45_RS19755 (IVG45_19710) - 4222983..4223228 (-) 246 WP_196435471.1 DUF2442 domain-containing protein -
  IVG45_RS19760 (IVG45_19715) - 4223206..4223439 (-) 234 WP_196435472.1 DUF4160 domain-containing protein -
  IVG45_RS19765 (IVG45_19720) sucD 4223449..4224315 (-) 867 WP_196435473.1 succinate--CoA ligase subunit alpha -
  IVG45_RS19770 (IVG45_19725) sucC 4224312..4225481 (-) 1170 WP_196435474.1 ADP-forming succinate--CoA ligase subunit beta -
  IVG45_RS19775 (IVG45_19730) - 4225568..4227193 (+) 1626 WP_196435475.1 ATP-binding protein -
  IVG45_RS19780 (IVG45_19735) pilR 4227190..4228536 (+) 1347 WP_196435476.1 sigma-54 dependent transcriptional regulator Regulator
  IVG45_RS19785 (IVG45_19740) - 4228773..4229255 (-) 483 WP_196435477.1 hypothetical protein -
  IVG45_RS19790 (IVG45_19745) - 4229576..4231429 (-) 1854 WP_196435478.1 EAL domain-containing protein -
  IVG45_RS19795 (IVG45_19750) - 4231611..4232456 (+) 846 WP_196435479.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49931.70 Da        Isoelectric Point: 7.0188

>NTDB_id=504061 IVG45_RS19780 WP_196435476.1 4227190..4228536(+) (pilR) [Methylomonas sp. LL1]
MNMPVTLVVDDEPDIRELLEITLSRMNIRTCSAENLAVARQLLASQHFDLCLTDMRLPDGDGLDLVEYIQESGLLLPVAV
ITAHGSMDTAIKAMKKGAFDFLTKPVDLAALRQLVNNALQTSRSRGLEKERRTRDTLLGESALMREIRSKIQKVARSQAP
IYISGESGSGKELVAKLIHQQSPRAEQPFVAINCGAIPHDLMESEFFGHKKGSFSGAIADKQGFFQAANGGTLFLDEVAD
LPLNLQVKLLRAIQEKKIRPVGDQHELAVDVRLLSATHKDLAKMVQEGSFRQDLYYRINVIELNLPPLRARASDIPQIVN
HLLIRLAKMNGVAVPQLSEAALMALGQYHFPGNVRELENILERALALHEGDRIEVEDLSLPICGERPRNDVNAVKPDRIS
LQSFMENIEKKTLTEALEQTRWDKMAAAKQLGITFRSLSFRLKRLGLE

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=504061 IVG45_RS19780 WP_196435476.1 4227190..4228536(+) (pilR) [Methylomonas sp. LL1]
ATGAACATGCCTGTCACCTTAGTGGTTGATGACGAACCCGATATTAGAGAATTATTGGAAATTACCCTGAGTAGGATGAA
TATCCGTACTTGTAGCGCGGAAAACTTGGCGGTGGCGCGGCAACTGTTAGCCAGTCAGCATTTTGATTTATGTTTAACCG
ATATGCGTTTGCCCGATGGCGATGGGCTGGATTTGGTCGAATATATTCAGGAATCGGGATTATTGTTGCCGGTGGCGGTA
ATCACCGCGCACGGCAGCATGGATACCGCGATCAAGGCCATGAAAAAGGGCGCGTTCGATTTTCTGACCAAACCGGTCGA
TTTGGCGGCCCTGCGGCAATTGGTTAACAACGCGCTACAAACCTCGCGGTCCAGAGGATTGGAAAAGGAAAGGCGTACGC
GCGATACGCTGCTGGGAGAGTCGGCGCTGATGCGCGAAATTCGCTCGAAAATTCAAAAGGTGGCGCGTAGCCAGGCCCCG
ATTTACATCAGCGGTGAATCGGGTTCGGGCAAGGAGTTGGTGGCCAAGTTGATTCATCAGCAAAGCCCACGGGCTGAGCA
GCCGTTTGTGGCGATCAATTGCGGAGCCATTCCGCATGATCTGATGGAAAGCGAGTTTTTTGGACATAAGAAAGGTAGTT
TCAGCGGCGCGATAGCCGATAAACAAGGTTTTTTCCAGGCCGCCAATGGCGGCACCTTGTTTCTGGATGAAGTGGCGGAT
TTGCCGCTAAATTTGCAGGTTAAATTGCTAAGAGCCATTCAGGAGAAAAAAATCCGCCCGGTCGGTGATCAGCACGAGTT
GGCGGTGGATGTGCGTCTACTTAGTGCCACGCATAAAGATCTGGCGAAAATGGTGCAAGAGGGCAGTTTCAGGCAGGATT
TGTATTATCGCATCAATGTCATCGAACTAAACTTACCGCCATTAAGAGCCAGAGCTAGCGATATACCACAAATTGTTAAC
CATCTGCTGATACGTTTGGCCAAGATGAATGGCGTTGCGGTGCCGCAGTTGAGCGAAGCCGCCTTGATGGCCCTGGGCCA
ATATCATTTTCCCGGCAATGTACGTGAACTGGAAAACATCCTGGAGCGGGCACTGGCCTTGCACGAAGGCGATCGGATCG
AGGTCGAGGATTTGAGTTTACCTATTTGCGGTGAACGGCCTAGAAATGATGTTAATGCGGTTAAACCGGACAGAATATCT
CTGCAAAGCTTTATGGAAAACATAGAGAAAAAGACTTTGACCGAGGCTCTGGAACAAACCCGCTGGGATAAAATGGCGGC
GGCGAAACAATTGGGCATAACCTTCCGTTCCCTGTCTTTCCGCTTGAAAAGACTGGGGTTGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(138-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T0JMA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.504

100

0.621
  pilR Acinetobacter baumannii strain A118

48.59

100

0.5