Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   KRG72_RS04560 Genome accession   NZ_CP076703
Coordinates   900990..902060 (+) Length   356 a.a.
NCBI ID   WP_258256167.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 895990..907060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS04545 (KRG72_04550) - 897717..898304 (+) 588 WP_258256160.1 MptD family putative ECF transporter S component -
  KRG72_RS04550 (KRG72_04555) - 898371..899060 (+) 690 WP_133018287.1 energy-coupling factor transporter transmembrane component T -
  KRG72_RS04555 (KRG72_04560) - 899065..900450 (+) 1386 WP_258256164.1 ATP-binding cassette domain-containing protein -
  KRG72_RS04560 (KRG72_04565) xerS 900990..902060 (+) 1071 WP_258256167.1 tyrosine recombinase XerS Machinery gene
  KRG72_RS04565 (KRG72_04570) - 902172..902852 (-) 681 WP_258256168.1 helix-turn-helix transcriptional regulator -
  KRG72_RS04570 (KRG72_04575) - 902936..903883 (-) 948 WP_258256169.1 HAMP domain-containing sensor histidine kinase -
  KRG72_RS04575 (KRG72_04580) braR 903880..904542 (-) 663 WP_258256170.1 response regulator transcription factor Regulator
  KRG72_RS04580 (KRG72_04585) - 904644..906620 (-) 1977 WP_074867517.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41343.46 Da        Isoelectric Point: 9.6571

>NTDB_id=504060 KRG72_RS04560 WP_258256167.1 900990..902060(+) (xerS) [Streptococcus equinus strain S1]
MKREKLLEKIDELKTIMPWYVLDYYQSKLSVPYSFTTLYEYLKEYRRFFEWILESGISNANQIADIDLSTLEHLSKKDME
SFVLYLRERPSLNTYSTKQGVSQTTINRTLSALSSLFKYLTEEVEDENGDPYFYRNVMKKISTKKKKETLAARAENIKGK
LFLGDETMAFIEYIDKEYQNKLSHRALSSFQKNKERDLAIIALLLASGVRLSEAVNLDLKDLHLNMMVIEVTRKGGKRDS
VNVATFAKPYLEEYLKIRAPRYKAEKQDQALFLTEYRGVPNRIDASSIEKLVAKYSQDFKVRVTPHKLRHTLATRLYGAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=504060 KRG72_RS04560 WP_258256167.1 900990..902060(+) (xerS) [Streptococcus equinus strain S1]
ATGAAACGTGAAAAATTACTCGAAAAAATTGATGAACTCAAAACAATCATGCCTTGGTATGTCCTAGACTATTACCAATC
AAAACTTTCTGTGCCCTACAGTTTTACAACCTTGTACGAGTACCTCAAAGAATATAGACGATTTTTCGAATGGATTCTCG
AATCTGGTATTTCAAATGCCAATCAGATTGCTGATATTGATTTAAGTACTTTAGAGCATTTATCCAAAAAAGATATGGAA
TCCTTCGTTCTTTATCTACGTGAACGTCCTTCTTTAAATACCTATTCAACCAAGCAAGGGGTTTCACAAACCACTATCAA
TCGTACCTTATCAGCACTTTCAAGCTTATTTAAGTACCTGACAGAAGAGGTTGAGGATGAAAATGGTGACCCCTACTTCT
ATCGAAATGTCATGAAAAAGATATCAACGAAGAAAAAGAAAGAAACTCTGGCAGCTCGCGCTGAAAATATTAAAGGAAAG
CTCTTCTTGGGTGATGAAACAATGGCTTTTATCGAGTATATCGATAAAGAGTACCAAAATAAGCTCTCTCACCGTGCCCT
CTCCTCCTTCCAGAAGAACAAGGAGCGAGATTTGGCAATTATCGCCCTTCTTCTTGCGTCTGGTGTTCGTCTTTCTGAGG
CTGTTAATCTTGATTTGAAGGATTTACATCTGAATATGATGGTTATCGAAGTCACTCGTAAAGGTGGCAAACGCGATTCT
GTGAATGTTGCTACTTTTGCTAAACCGTACCTTGAAGAGTATTTAAAAATTCGTGCACCTCGTTATAAAGCAGAAAAACA
AGATCAAGCACTATTTTTAACAGAATACCGTGGTGTTCCAAATCGTATCGATGCTTCAAGTATTGAAAAATTGGTTGCCA
AGTATTCGCAAGATTTTAAGGTTCGTGTGACTCCCCACAAACTTCGTCACACATTAGCAACGAGACTGTATGGCGCAACT
AAATCACAAGTTTTGGTTAGTCACCAACTAGGGCATGCCAGCACTCAGGTTACTGACTTGTATACCCATATCGTTAATGA
TGAACAAAAAAATGCGCTTGATAAATTGTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837