Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   KRG72_RS03445 Genome accession   NZ_CP076703
Coordinates   663426..666668 (+) Length   1080 a.a.
NCBI ID   WP_258255882.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 658426..671668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS03430 (KRG72_03430) pheS 659204..660247 (+) 1044 WP_014334511.1 phenylalanine--tRNA ligase subunit alpha -
  KRG72_RS03435 (KRG72_03435) - 660280..660804 (+) 525 WP_258255880.1 N-acetyltransferase -
  KRG72_RS03440 (KRG72_03440) pheT 660874..663279 (+) 2406 WP_258255881.1 phenylalanine--tRNA ligase subunit beta -
  KRG72_RS03445 (KRG72_03445) rexB 663426..666668 (+) 3243 WP_258255882.1 ATP-dependent nuclease subunit B Machinery gene
  KRG72_RS03450 (KRG72_03450) rexA 666658..670284 (+) 3627 WP_258255884.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  KRG72_RS03455 (KRG72_03455) - 670387..671532 (-) 1146 WP_074869078.1 cobalamin-independent methionine synthase II family protein -

Sequence

Protein


Download         Length: 1080 a.a.        Molecular weight: 124672.44 Da        Isoelectric Point: 5.0507

>NTDB_id=504051 KRG72_RS03445 WP_258255882.1 663426..666668(+) (rexB) [Streptococcus equinus strain S1]
MKLLYTDIQFDMTEILARKAMEEAKAGKRVFYIAPNSLSFEKERAVLELLPDQASFAITITRFAQMARYFVLNEPQTKET
IDDNGLAMIFYRALSHFSDTDLKVFGRLKQDTNFIKQLVDLYKELKTANMTVLDLTELHSAEKQEDLVKIFLAVNDILLA
NQYENQSKIAFFAKQVASGHLDDALENVVLVIDGFTRFSAEEEDLVSLLEEKCAQVIIGTYSSQKAYKATFSTGNVYQAS
LDFLRSLAAKFQTQPEYVESSQKSQEAFAKLSKLFEAKHDFTTSDITLTQDDKEHYAIWDVINQKEEVEHVAKAIRHKLH
QGYRYKDILVLLGDVDSYRLQIGKIFDKYEIPYYFGKAESMSDHPLVHFIDSLERVKRYRFRTEDVVNLLKTGLYGSFKQ
DDLDLFEQYLIYADIKGQSKFAKEFTIAYKGEEHLAYVNRMREQIMAPLLALFKAQKQLGSSLLEKLMTFLRVISLPENL
DRMVATFSENEQEKHEQVWRTFTGILEQFQTIFGQEKLSLDEFLALLRSGMLAAQYRVVPASVDVVSVKSYDLVEPHTNK
FVFALGMTQSHFPKIAQNRSLISDEERAKVNETTAENQRFDVISRENIKKNHFAALSLFNSATEELVLSLPQIANESEDK
ESSYLAELASFGVPVLVKGRNRLSTDAEDIGNYKALLSRVIEVNRLAIEEDRELSKEEQTFWSVAVRYLRKKLANEDVEL
PLIKDNMQTKPVSAEVIETRFPSDEPINLSSSAVTTFYNNQYKYFLQYVLGLQEVETIHPDARNHGTYLHRVFELVMKDV
SDQAFDDKLNRAIQTTNAEDAFKFVYEEDEESRYSLTVLEDIARSTATILRQDAQIQVENEEEPFELMLANAVRIRGIID
RVDRLSDGSLGVVDYKSSHNTFDIQKFYNGLNPQLVTYMQALRDKKIKSESDKIFGAMYLHMQEPKVDLSTVATTEKILE
NLSKELRYRGLFLEEEKGYLANGNYHLNDSVYTQEELDILLAYNQKLFLQAAEQIRQGHFLINPYSEDGKTVKGDQLKAI
TRFEADRHMPYARKWFKLPRKDRRQGFLNLMQEEEEKDDL

Nucleotide


Download         Length: 3243 bp        

>NTDB_id=504051 KRG72_RS03445 WP_258255882.1 663426..666668(+) (rexB) [Streptococcus equinus strain S1]
ATGAAATTATTATATACAGATATTCAGTTTGATATGACTGAAATTTTGGCAAGAAAAGCGATGGAAGAGGCTAAAGCTGG
TAAGCGTGTTTTCTACATCGCTCCAAACTCTTTGTCTTTTGAAAAAGAAAGGGCAGTTTTGGAACTTTTGCCTGACCAAG
CGTCTTTTGCCATTACCATTACACGTTTTGCTCAAATGGCGCGCTATTTTGTCTTAAATGAACCTCAGACCAAAGAAACG
ATTGATGATAATGGCTTAGCCATGATTTTTTATCGTGCGCTGTCTCATTTTTCTGATACAGATTTGAAAGTTTTCGGGCG
TTTAAAGCAAGATACGAATTTCATCAAGCAATTGGTTGATTTGTATAAGGAATTAAAAACGGCTAACATGACCGTGCTTG
ATTTGACGGAATTGCATTCGGCTGAGAAGCAAGAAGATTTGGTGAAAATCTTTTTGGCAGTTAATGACATTTTGTTAGCT
AACCAGTATGAAAATCAGTCAAAAATTGCATTTTTTGCTAAGCAGGTAGCATCGGGTCATTTGGATGATGCGCTTGAAAA
TGTTGTTTTGGTTATCGATGGCTTTACTCGTTTTTCAGCAGAAGAGGAAGACTTAGTCAGCCTTTTAGAAGAAAAATGTG
CTCAAGTGATTATCGGAACTTACAGTAGTCAAAAGGCTTATAAGGCTACATTTTCAACTGGGAATGTCTATCAGGCAAGT
TTGGATTTTTTGCGTTCTTTAGCTGCTAAATTTCAAACACAGCCAGAGTATGTCGAGAGTTCTCAAAAATCTCAAGAAGC
ATTTGCTAAATTGTCAAAACTCTTTGAAGCGAAGCACGACTTTACAACATCAGACATCACTTTAACGCAAGATGATAAGG
AACATTATGCCATCTGGGATGTTATTAATCAAAAAGAAGAAGTTGAGCATGTGGCAAAGGCTATTCGTCATAAGCTTCAC
CAAGGCTATCGTTATAAGGATATTTTGGTACTTTTGGGTGATGTAGATAGCTATCGTCTGCAAATCGGCAAAATTTTTGA
TAAATATGAAATTCCGTATTATTTTGGAAAAGCAGAGTCGATGAGTGACCATCCTTTGGTGCATTTTATTGATTCCTTGG
AGCGTGTGAAACGTTATCGTTTTCGTACTGAAGATGTCGTCAACCTCCTGAAAACTGGCCTTTATGGTTCCTTCAAGCAA
GATGATTTGGACCTTTTTGAGCAATATTTGATTTATGCGGACATCAAGGGACAAAGTAAATTTGCTAAGGAGTTCACGAT
TGCCTACAAGGGTGAAGAGCATTTAGCTTATGTCAATCGCATGCGCGAGCAAATCATGGCACCTTTGCTAGCTTTATTTA
AGGCACAAAAGCAGCTTGGTTCAAGTTTGCTTGAAAAGCTGATGACTTTCTTACGTGTGATTTCTCTACCTGAGAATTTA
GATCGTATGGTAGCCACTTTCTCAGAAAATGAACAAGAAAAGCACGAGCAAGTTTGGCGAACATTTACTGGCATTCTCGA
GCAATTTCAAACGATTTTTGGACAAGAAAAATTATCTTTGGATGAATTTTTAGCCCTTTTAAGAAGTGGCATGTTGGCTG
CCCAGTACCGTGTGGTGCCGGCAAGCGTTGATGTAGTTTCTGTAAAATCTTATGATTTGGTTGAACCACACACCAATAAA
TTTGTCTTTGCACTTGGTATGACGCAGTCGCATTTCCCAAAAATTGCGCAAAATCGTAGTTTGATTTCAGATGAGGAACG
TGCTAAGGTCAATGAAACAACAGCTGAAAATCAACGTTTTGATGTGATTAGTCGTGAAAACATCAAAAAAAATCATTTTG
CTGCCTTGTCACTGTTTAATTCAGCGACGGAAGAACTGGTGCTCAGTTTGCCACAAATTGCTAATGAGTCAGAAGATAAG
GAATCTTCTTATCTTGCGGAATTAGCTAGCTTTGGTGTGCCTGTTTTGGTTAAGGGACGAAATCGTTTGTCGACAGATGC
TGAAGACATTGGAAATTACAAAGCGCTCTTATCTCGTGTGATTGAAGTTAATCGTTTGGCTATTGAAGAAGACCGCGAGC
TTAGCAAAGAAGAGCAAACCTTCTGGTCAGTAGCTGTACGTTATCTTCGTAAAAAACTGGCTAACGAAGATGTTGAATTG
CCACTGATTAAGGATAATATGCAGACCAAACCAGTTTCTGCCGAAGTGATTGAGACACGTTTTCCAAGTGATGAGCCGAT
TAATTTATCTTCTTCTGCTGTGACCACTTTTTATAACAACCAATACAAGTATTTCTTGCAGTATGTTCTTGGGTTACAGG
AAGTTGAGACAATCCATCCTGATGCTAGAAATCACGGAACTTATCTTCACCGTGTCTTTGAATTGGTCATGAAAGATGTT
TCGGATCAAGCTTTTGACGACAAATTAAATCGAGCTATTCAAACAACCAACGCTGAAGATGCTTTCAAATTTGTCTATGA
AGAAGACGAGGAAAGCCGCTACTCATTGACAGTCTTAGAAGATATTGCTAGAAGCACGGCGACAATTTTACGTCAGGATG
CTCAAATCCAGGTGGAAAATGAAGAAGAACCTTTTGAGTTAATGCTTGCCAATGCAGTACGTATTCGAGGCATTATTGAC
CGTGTGGACCGTTTGTCAGATGGTAGTCTTGGGGTGGTTGATTACAAATCAAGTCACAATACCTTTGATATTCAAAAATT
CTACAATGGTCTCAACCCGCAATTAGTGACTTACATGCAAGCTCTTCGCGATAAAAAAATTAAAAGTGAGTCAGATAAGA
TTTTTGGAGCCATGTACCTTCACATGCAAGAGCCAAAAGTGGATTTGTCAACGGTAGCTACCACAGAGAAAATTTTGGAG
AATTTGTCTAAAGAATTGCGCTATCGTGGTTTGTTCCTTGAAGAGGAAAAAGGCTATTTAGCTAATGGCAATTATCATCT
TAATGATTCTGTTTACACGCAAGAAGAGTTAGATATTTTACTAGCTTATAATCAAAAATTATTCCTTCAAGCAGCTGAGC
AGATTAGACAAGGACACTTTTTGATTAATCCTTACAGTGAGGATGGTAAGACGGTTAAGGGTGACCAATTAAAAGCTATC
ACACGCTTTGAAGCGGACCGCCACATGCCATACGCACGCAAGTGGTTTAAATTACCAAGAAAAGACAGACGTCAAGGCTT
TTTGAACTTGATGCAAGAAGAGGAGGAGAAAGATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(749-1026)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.352

100

0.444