Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   KRG72_RS02035 Genome accession   NZ_CP076703
Coordinates   375853..376887 (+) Length   344 a.a.
NCBI ID   WP_258255648.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 370853..381887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS02005 (KRG72_02005) tsaE 372123..372566 (+) 444 WP_074561333.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  KRG72_RS02010 (KRG72_02010) - 372559..373071 (+) 513 WP_074565147.1 GNAT family N-acetyltransferase -
  KRG72_RS02015 (KRG72_02015) - 373082..374254 (+) 1173 WP_258255645.1 LCP family protein -
  KRG72_RS02020 (KRG72_02020) - 374340..374645 (-) 306 WP_133017822.1 hypothetical protein -
  KRG72_RS02025 (KRG72_02025) - 374642..375061 (-) 420 WP_074565143.1 HIT family protein -
  KRG72_RS02030 (KRG72_02030) pptA 375125..375850 (+) 726 WP_166043738.1 ABC transporter ATP-binding protein Regulator
  KRG72_RS02035 (KRG72_02035) pptB 375853..376887 (+) 1035 WP_258255648.1 ABC transporter permease Regulator
  KRG72_RS02040 (KRG72_02040) ccrZ 376940..377761 (+) 822 WP_039695962.1 cell cycle regulator CcrZ -
  KRG72_RS02045 (KRG72_02045) trmB 377761..378399 (+) 639 WP_039695961.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  KRG72_RS02050 (KRG72_02050) - 378745..379770 (+) 1026 WP_258255649.1 sensor domain-containing diguanylate cyclase -
  KRG72_RS02055 (KRG72_02055) - 379776..380843 (+) 1068 WP_258255651.1 bifunctional glycosyltransferase family 2/GtrA family protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 39983.50 Da        Isoelectric Point: 10.4546

>NTDB_id=504029 KRG72_RS02035 WP_258255648.1 375853..376887(+) (pptB) [Streptococcus equinus strain S1]
MKEVFRKRRSLFLGQCLKYLRYVLNDHFVLVLLFLSGFLMVQYGELLKHFPKQHWWLDVILVIVTLALLSLGKIATYIEA
PDKLFYLPKEEEVVAWIHQARVRSFGVWAVLQTAVFLLLAPIFFKLGFSVPVLAVLLLILLGIKWVIMARKEKVFFRNGH
FSWETAITYETKRRQSILKFFALFTTVKGISASVKRRVYLDKMLGLVKKRHDKTWSNLYLRAFLRSSDYLALTLRLVLLG
VLALLFIPNHLVAAGLALIFNYLLLFQLLGLAQHFEYQYLTRLYPISEAQKMANLKALLRILSYMICLLDVLLCFSLKAA
GLLILITVIVTEWYLPYKIAKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=504029 KRG72_RS02035 WP_258255648.1 375853..376887(+) (pptB) [Streptococcus equinus strain S1]
ATGAAAGAAGTTTTTCGAAAACGACGCAGCCTCTTTTTAGGGCAATGTCTGAAATACTTGCGTTATGTCTTAAATGATCA
TTTTGTCTTGGTCTTGCTTTTCTTATCAGGCTTTTTGATGGTCCAATACGGTGAGTTATTAAAGCATTTTCCAAAGCAAC
ATTGGTGGCTTGATGTCATTTTGGTCATTGTGACGCTTGCTCTTCTTAGTCTTGGTAAAATTGCAACTTATATTGAGGCA
CCAGATAAGCTATTTTATTTGCCAAAGGAAGAAGAAGTGGTGGCTTGGATTCACCAAGCAAGAGTCCGTTCTTTTGGTGT
TTGGGCAGTGCTACAAACAGCTGTTTTCTTGTTGCTAGCACCTATTTTCTTTAAATTAGGTTTCTCAGTTCCTGTTCTTG
CGGTACTTTTGCTAATTTTACTTGGTATCAAGTGGGTGATTATGGCAAGAAAAGAAAAAGTCTTTTTTAGAAATGGTCAT
TTTTCTTGGGAAACTGCCATTACTTATGAAACCAAACGCCGTCAATCTATTTTGAAATTCTTTGCCCTCTTTACAACGGT
TAAGGGAATTTCGGCAAGTGTCAAACGTCGTGTTTACTTAGATAAGATGCTTGGTTTGGTTAAGAAACGTCACGATAAAA
CATGGTCAAATCTTTATCTCAGGGCCTTTCTTCGTAGTTCGGATTATCTGGCTTTAACTTTGCGTCTGGTTTTATTAGGT
GTTCTTGCTTTGCTGTTTATTCCAAATCATCTGGTAGCAGCTGGACTTGCTTTAATTTTTAATTATCTTTTACTGTTTCA
GTTGTTAGGACTTGCTCAACATTTTGAGTATCAATATTTAACACGCTTATACCCCATTTCAGAAGCGCAGAAAATGGCGA
ATTTAAAGGCTTTGCTACGAATTTTATCTTATATGATTTGCTTGCTTGATGTGTTATTATGTTTTTCTTTGAAGGCTGCA
GGGCTTTTGATTTTGATTACTGTAATTGTTACAGAATGGTATCTTCCTTACAAAATTGCGAAGATGATTGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.954

100

0.462

  pptB Streptococcus thermophilus LMD-9

45.93

100

0.459