Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG   Type   Machinery gene
Locus tag   KRG72_RS00725 Genome accession   NZ_CP076703
Coordinates   107178..107528 (+) Length   116 a.a.
NCBI ID   WP_074561135.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 102178..112528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS00690 (KRG72_00690) - 103481..103849 (+) 369 WP_258255451.1 DUF1033 family protein -
  KRG72_RS00695 (KRG72_00695) comGA 103922..104863 (+) 942 WP_258255452.1 competence type IV pilus ATPase ComGA Machinery gene
  KRG72_RS00700 (KRG72_00700) comGB 104787..105830 (+) 1044 WP_258255453.1 competence type IV pilus assembly protein ComGB Machinery gene
  KRG72_RS00705 (KRG72_00705) comGC/cglC 105830..106123 (+) 294 WP_258255454.1 competence type IV pilus major pilin ComGC Machinery gene
  KRG72_RS00710 (KRG72_00710) comGD 106107..106538 (+) 432 WP_258255455.1 competence type IV pilus minor pilin ComGD Machinery gene
  KRG72_RS00715 (KRG72_00715) comGE 106492..106785 (+) 294 WP_258255456.1 competence type IV pilus minor pilin ComGE Machinery gene
  KRG72_RS00720 (KRG72_00720) comGF 106769..107206 (+) 438 WP_133018089.1 competence type IV pilus minor pilin ComGF Machinery gene
  KRG72_RS00725 (KRG72_00725) comGG 107178..107528 (+) 351 WP_074561135.1 competence type IV pilus minor pilin ComGG Machinery gene
  KRG72_RS00730 (KRG72_00730) comGH 107582..108538 (+) 957 WP_074561136.1 class I SAM-dependent methyltransferase Machinery gene
  KRG72_RS00735 (KRG72_00735) - 108592..109791 (+) 1200 WP_258255457.1 acetate kinase -
  KRG72_RS00740 (KRG72_00740) - 109951..110148 (+) 198 WP_258255458.1 helix-turn-helix transcriptional regulator -
  KRG72_RS00745 (KRG72_00745) - 110164..110364 (+) 201 WP_006531740.1 hypothetical protein -
  KRG72_RS00750 (KRG72_00750) - 110365..110820 (+) 456 WP_258255459.1 ABC transporter permease -
  KRG72_RS00755 (KRG72_00755) - 110836..111471 (+) 636 WP_074965272.1 CPBP family intramembrane glutamic endopeptidase -
  KRG72_RS00760 (KRG72_00760) proC 111506..112276 (-) 771 WP_258255460.1 pyrroline-5-carboxylate reductase -

Sequence


Protein


Download         Length: 116 a.a.        Molecular weight: 13402.47 Da        Isoelectric Point: 6.7188

>NTDB_id=504017 KRG72_RS00725 WP_074561135.1 107178..107528(+) (comGG) [Streptococcus equinus strain S1]
MFTLLRRQVKAGILLYALLMAAIFALLLQFYLGRVVASERQHQAQLKSAQAYLMAEMSKNLADEESGQCQFDKGTVSYHY
DDKILVETVTLDSKEEFQYTFYLPKKEKQALEKESH

Nucleotide


Download         Length: 351 bp        

>NTDB_id=504017 KRG72_RS00725 WP_074561135.1 107178..107528(+) (comGG) [Streptococcus equinus strain S1]
TTGTTTACACTTTTGAGACGACAAGTTAAAGCGGGAATTTTATTATATGCTTTGCTGATGGCGGCTATCTTTGCCCTACT
TTTGCAATTTTATTTGGGGCGCGTGGTTGCAAGTGAGCGTCAACATCAGGCACAATTAAAATCGGCTCAAGCTTACCTGA
TGGCAGAAATGAGTAAGAACTTGGCTGATGAGGAATCAGGACAATGCCAATTTGATAAAGGGACAGTGAGTTATCACTAC
GACGATAAAATCTTAGTTGAAACCGTTACGTTAGATAGCAAAGAGGAGTTTCAATACACGTTTTACCTTCCTAAGAAAGA
AAAACAAGCACTTGAAAAAGAAAGTCACTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

47.17

91.379

0.431

  comGG Streptococcus mutans UA159

47.17

91.379

0.431

  comGG/cglG Streptococcus mitis NCTC 12261

43.434

85.345

0.371

  comGG/cglG Streptococcus pneumoniae Rx1

42.424

85.345

0.362

  comGG/cglG Streptococcus pneumoniae D39

42.424

85.345

0.362

  comGG/cglG Streptococcus pneumoniae R6

42.424

85.345

0.362

  comGG/cglG Streptococcus pneumoniae TIGR4

42.424

85.345

0.362