Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SCRE_RS03215 Genome accession   NC_022236
Coordinates   637221..640496 (+) Length   1091 a.a.
NCBI ID   WP_006267494.1    Uniprot ID   F9P592
Organism   Streptococcus constellatus subsp. pharyngis C232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 632221..645496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCRE_RS03185 (SCRE_0629) - 632529..633395 (+) 867 WP_006267528.1 ABC transporter permease -
  SCRE_RS03190 (SCRE_0630) - 633392..634147 (+) 756 WP_006267461.1 ABC transporter ATP-binding protein -
  SCRE_RS03195 (SCRE_0631) - 634160..634501 (-) 342 WP_037565830.1 hypothetical protein -
  SCRE_RS03200 (SCRE_0632) - 634588..634800 (+) 213 WP_003069777.1 YdbC family protein -
  SCRE_RS03205 (SCRE_0633) - 634996..635889 (+) 894 WP_006267306.1 ABC transporter ATP-binding protein -
  SCRE_RS03210 (SCRE_0634) - 635886..637100 (+) 1215 WP_006267100.1 ABC transporter permease -
  SCRE_RS03215 (SCRE_0635) rexB 637221..640496 (+) 3276 WP_006267494.1 ATP-dependent nuclease subunit B Machinery gene
  SCRE_RS03220 (SCRE_0636) rexA 640493..644173 (+) 3681 WP_020997711.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 125664.61 Da        Isoelectric Point: 5.0810

>NTDB_id=50393 SCRE_RS03215 WP_006267494.1 637221..640496(+) (rexB) [Streptococcus constellatus subsp. pharyngis C232]
MKLLYTDIRNPLTKILVKEAERLAQEGKRVFYIAPNSLSFEKERAVLALLENHASFAITVTRFAQMARYFILNDVQKGEN
IDDIGLSMLFYKVLSEMNEHDLRVYGGIRTDAQFIQQLVELYHELQVAQMSYTDLDYLEEAEKKADLIKIFQVVMYQLNQ
SEFTSDSNIMAFTHHIIAGDVDEELQDLVLVIDGFTRFSAEEAYLIELLHNKGVEIIIGAYASEKAYRASFREGNLYQAS
VDFLRQLAGKFEVKPEYIPASQPDDAFGNISKLLESRYDFSDVDLELTEQDRSHVQIWSTVNQKEELEYVAKSIRQLVHD
GVRYKDIRVLLGDVEAYHLQLKTIFDQYQIPFYLGRSEAMAHHPLVQFIEALVRLKHYNFRTEDLLNLLKTGLYGHLKQE
ELDLFEQYICFADVRGMSKFSKEFTHNQQRKFNLVHINQLRKNIVTPLLEFFKSRSQTATGLLQKFHQFLTTISFSQNFA
GLVDFTNPQDQERQEEVWKAFCHVLEQFANVFSASKVNLDDFLTLVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPF
VYAIGLTQDYFPKIVQNKSLLSDEERLRLNEATDAHSELLIAAQENLQKNRFVALSLLNAATERLVLSTPQIVNEIENNI
SSYLLELHEQPIALPIEVKRPQATSDDIGTYRALLARVIELNQGDIDRERFLTEKEQTFWSVAVRVLRKRLENEGISIPN
VTSSLETETLSTETLQALYPPHQAFQLSTSALTEFYRNQYAYFLKYVLALQEEMTIHPDARSHGNFLHRVFEKVMQDSSS
EPFDHRLEKAIQEVSCEPEFEALYTESAKALFAHEVLLDAAHATGRVLERNDLVETIQEEAVFGQESAEFLTLSDGRNLQ
IRGKVDRIDRLRSNDSLGIVDYKSSDTDFDFQKFFNGLNSQLPTYLMALKQEKWTSDEAQVFGAMYLQMTNPLVPLAKTK
SQSDAVKEVMKTLEYKGLFLSEQAYQLNDLYNKKKVNLLSQEELETLLAYNALLYRRAAEHILTGHFKINPYTENGKSIA
PFVEQYKSITGFEANLHLSSARHLVKLEGKNSTGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=50393 SCRE_RS03215 WP_006267494.1 637221..640496(+) (rexB) [Streptococcus constellatus subsp. pharyngis C232]
ATGAAATTACTTTATACAGATATTCGCAATCCCTTAACGAAGATTTTGGTGAAAGAAGCAGAACGCTTGGCACAGGAAGG
TAAGCGCGTGTTTTATATTGCACCTAATTCTCTTTCATTTGAAAAGGAGAGAGCTGTTTTGGCTCTTTTAGAAAACCATG
CTTCCTTTGCTATTACAGTGACACGTTTTGCGCAGATGGCACGTTATTTTATCCTCAATGATGTGCAAAAGGGAGAAAAC
ATAGATGATATTGGGCTTAGCATGCTCTTTTATAAAGTGCTTTCAGAAATGAATGAGCATGATTTGAGGGTGTATGGTGG
CATTCGGACGGATGCACAATTTATTCAGCAATTGGTTGAGCTCTATCATGAACTGCAAGTCGCTCAGATGAGTTATACAG
ACCTAGACTATTTGGAAGAAGCAGAGAAAAAAGCAGATTTAATCAAGATTTTTCAAGTAGTGATGTATCAGCTTAATCAG
AGTGAATTTACTTCTGATTCAAATATCATGGCCTTTACCCATCATATTATAGCAGGTGATGTGGATGAGGAACTGCAGGA
TTTAGTCTTGGTTATTGATGGGTTTACGCGCTTTTCGGCTGAGGAAGCTTATTTGATCGAGCTTTTGCATAATAAGGGTG
TGGAAATTATCATCGGTGCTTATGCAAGTGAAAAAGCGTATCGTGCAAGTTTTCGAGAGGGCAATCTTTATCAGGCGAGT
GTTGATTTCTTGCGACAGTTGGCAGGTAAATTTGAAGTGAAACCTGAATATATACCAGCAAGCCAGCCAGATGATGCATT
TGGAAATATTTCAAAACTGTTAGAAAGTCGGTATGATTTCTCAGATGTTGACCTAGAGTTAACGGAGCAGGATCGCTCGC
ATGTGCAGATTTGGTCAACAGTCAATCAAAAGGAAGAATTAGAATATGTAGCAAAAAGCATTCGTCAGTTAGTTCATGAT
GGAGTTCGTTATAAGGATATTCGCGTTCTTTTGGGAGATGTGGAAGCGTATCATTTACAATTAAAGACGATTTTTGATCA
GTATCAAATCCCTTTTTATCTGGGACGAAGTGAGGCTATGGCCCATCACCCTTTGGTGCAATTTATTGAAGCTTTAGTGC
GCCTAAAACACTACAATTTTCGAACGGAAGATTTGCTCAATCTCTTAAAAACAGGTCTTTATGGTCATTTAAAGCAAGAA
GAACTAGACTTGTTTGAGCAATATATCTGCTTTGCAGACGTGAGAGGAATGAGTAAGTTTTCTAAAGAATTTACTCATAA
TCAACAACGAAAATTTAATCTAGTTCATATCAATCAATTAAGAAAAAATATAGTCACTCCTCTCTTGGAATTTTTTAAAT
CTCGCAGTCAAACAGCGACAGGCCTGCTTCAAAAATTTCATCAATTTTTAACAACAATTTCTTTTTCTCAGAATTTTGCT
GGTTTAGTAGATTTTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGCCATGTTTTGGAACA
ATTTGCCAATGTCTTTTCAGCTAGCAAAGTCAATCTAGATGATTTTCTGACTCTGGTGCAGTCAGGAATGCTGTTATCTA
ATTATCGAACGATTCCAGCAACAGTAGACGTTGTGACCGTTCAGTCTTATGACTTGATTGAGCCGTTGTCAAGTCCTTTT
GTTTACGCGATTGGTTTGACCCAAGACTATTTTCCAAAAATTGTGCAAAACAAGAGTCTCTTGTCAGATGAAGAACGATT
ACGATTAAATGAAGCGACTGATGCGCATTCGGAATTGCTGATTGCTGCTCAGGAAAATCTCCAGAAAAATCGTTTTGTCG
CTTTGTCGCTTCTGAATGCTGCAACAGAGAGGTTGGTGCTTTCTACTCCTCAGATTGTCAATGAAATAGAAAACAATATT
TCTTCCTATTTACTAGAACTGCATGAACAACCAATTGCTTTGCCAATTGAAGTGAAGCGTCCGCAGGCAACGAGTGATGA
TATTGGAACTTATCGAGCTCTGCTGGCAAGGGTTATTGAGTTGAATCAAGGGGATATTGATCGGGAGCGCTTTTTGACGG
AGAAGGAACAGACTTTTTGGTCAGTCGCCGTACGAGTTTTGCGCAAAAGATTAGAAAACGAAGGCATTTCGATTCCGAAT
GTCACGTCAAGTCTTGAAACAGAAACCTTGTCAACGGAGACATTGCAAGCTCTTTATCCGCCTCATCAGGCATTTCAGCT
ATCTACCTCAGCTTTGACAGAATTCTACCGCAATCAATATGCTTATTTTTTGAAGTATGTCTTGGCTTTGCAGGAAGAAA
TGACGATTCACCCAGATGCGCGCAGTCATGGAAATTTCCTGCATCGTGTTTTTGAAAAAGTCATGCAAGATTCGTCAAGT
GAGCCATTTGATCATCGTTTAGAAAAAGCTATTCAGGAAGTAAGCTGTGAACCGGAGTTTGAAGCTCTTTATACCGAAAG
TGCCAAAGCATTGTTTGCTCATGAAGTTTTGCTTGACGCAGCGCATGCGACAGGGCGTGTTCTAGAAAGAAATGATTTAG
TAGAAACTATTCAGGAAGAGGCTGTTTTTGGGCAAGAGAGTGCAGAATTTTTAACCTTATCAGATGGTCGCAATCTTCAA
ATTCGAGGAAAAGTTGACCGCATTGACCGATTGAGAAGTAATGACAGTCTGGGAATTGTGGATTATAAATCAAGTGACAC
AGATTTTGATTTTCAAAAATTTTTCAATGGTTTGAATTCTCAATTACCTACGTATCTAATGGCATTGAAACAAGAAAAGT
GGACGAGTGATGAAGCACAGGTTTTTGGCGCCATGTATTTGCAGATGACCAATCCACTCGTACCTTTAGCGAAGACCAAG
TCGCAGAGTGATGCAGTCAAAGAGGTGATGAAAACGTTAGAATACAAGGGGCTATTTCTATCGGAGCAAGCTTATCAGCT
CAATGATTTGTATAATAAAAAGAAAGTCAATTTATTAAGTCAAGAAGAGCTAGAAACTTTGTTAGCTTATAATGCACTCT
TGTACCGTCGTGCTGCCGAGCATATATTGACAGGGCATTTTAAGATTAATCCTTATACAGAAAATGGCAAAAGTATTGCA
CCTTTTGTGGAACAATATAAGTCCATTACAGGTTTTGAAGCCAATCTTCATCTTTCTAGTGCCCGACATTTAGTGAAATT
AGAAGGTAAGAACTCAACGGGTGAGAAGAAGCGTCAAGCATGGATAGAAAAGATGAAGGAGGAGTTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(746-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9P592

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.05

100

0.555

Multiple sequence alignment