Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWI14_RS09810 Genome accession   NZ_CP064631
Coordinates   1945488..1945883 (-) Length   131 a.a.
NCBI ID   WP_001829977.1    Uniprot ID   A0A4Q9W3V8
Organism   Staphylococcus epidermidis strain UMCG341     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1940488..1950883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI14_RS09785 (HWI14_09690) thiE 1941228..1941866 (-) 639 WP_002505076.1 thiamine phosphate synthase -
  HWI14_RS09790 (HWI14_09695) thiM 1941872..1942660 (-) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  HWI14_RS09795 (HWI14_09700) thiD 1942653..1943474 (-) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HWI14_RS09800 (HWI14_09705) tenA 1943467..1944156 (-) 690 WP_001829894.1 thiaminase II -
  HWI14_RS09805 (HWI14_09710) - 1944441..1945100 (-) 660 WP_001829904.1 transglycosylase family protein -
  HWI14_RS09810 (HWI14_09715) ssb 1945488..1945883 (-) 396 WP_001829977.1 single-stranded DNA-binding protein Machinery gene
  HWI14_RS09815 (HWI14_09720) - 1946074..1946514 (+) 441 WP_001829935.1 YwpF-like family protein -
  HWI14_RS09820 (HWI14_09725) fabZ 1946832..1947269 (-) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HWI14_RS09825 (HWI14_09730) murA 1947303..1948568 (-) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HWI14_RS09830 (HWI14_09735) - 1948678..1948911 (-) 234 WP_408020801.1 DUF1146 family protein -
  HWI14_RS09835 (HWI14_09740) - 1949060..1949464 (-) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15158.08 Da        Isoelectric Point: 5.2661

>NTDB_id=503808 HWI14_RS09810 WP_001829977.1 1945488..1945883(-) (ssb) [Staphylococcus epidermidis strain UMCG341]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDINEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=503808 HWI14_RS09810 WP_001829977.1 1945488..1945883(-) (ssb) [Staphylococcus epidermidis strain UMCG341]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATATTAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q9W3V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

73.282

100

0.733
  ssb Staphylococcus aureus MW2

72.519

100

0.725