Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   HWI17_RS00305 Genome accession   NZ_CP064622
Coordinates   64026..65654 (-) Length   542 a.a.
NCBI ID   WP_408023194.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain UMCG344     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59026..70654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI17_RS00275 (HWI17_00280) - 59367..60353 (+) 987 WP_001549960.1 beta-lactam sensor/signal transducer MecR1 -
  HWI17_RS00280 (HWI17_00285) - 60343..60585 (+) 243 Protein_53 type I restriction enzyme endonuclease domain-containing protein -
  HWI17_RS00285 (HWI17_00290) - 60576..62186 (-) 1611 Protein_54 IS1182 family transposase -
  HWI17_RS00290 (HWI17_00295) - 62235..62741 (-) 507 WP_001092194.1 DUF1643 domain-containing protein -
  HWI17_RS00295 (HWI17_00300) - 62756..63067 (-) 312 WP_000700851.1 DUF960 family protein -
  HWI17_RS00300 (HWI17_00305) - 63154..63504 (-) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  HWI17_RS00305 (HWI17_00310) ccrB 64026..65654 (-) 1629 WP_408023194.1 cassette chromosome recombinase CcrB Machinery gene
  HWI17_RS00310 (HWI17_00315) ccrA 65676..67025 (-) 1350 WP_000815640.1 cassette chromosome recombinase CcrA Machinery gene
  HWI17_RS00315 (HWI17_00320) cch1 67259..69052 (-) 1794 WP_000079473.1 cassette chromosome replicative helicase -
  HWI17_RS00320 (HWI17_00325) ssb 69052..69348 (-) 297 WP_000273823.1 cassette chromosome ssDNA-binding protein -
  HWI17_RS00325 (HWI17_00330) - 69541..70587 (-) 1047 WP_001042023.1 hypothetical protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62640.80 Da        Isoelectric Point: 9.7970

>NTDB_id=503669 HWI17_RS00305 WP_408023194.1 64026..65654(-) (ccrB) [Staphylococcus epidermidis strain UMCG344]
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRMLKDAKEGNIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFECYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK
YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYD
EVQIKINNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK
ALYLSVVDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=503669 HWI17_RS00305 WP_408023194.1 64026..65654(-) (ccrB) [Staphylococcus epidermidis strain UMCG344]
ATGCAACAACTTAAAACAAAACGTGTCGGTATCTATGTACGTGTATCAACAGAAATGCAAAGCACAGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATACTGTGACTTCCATCATTTTGAAGTTAAAGATATATACGCTGACCGTGGTA
TTTCAGGTAAATCTATGAACAGACCTGAGCTCCAACGTATGTTGAAAGATGCAAAAGAAGGCAATATCGACTGTGTTATG
GTATACAAAACAAACCGATTAGCTCGTAATACATCTGATCTTCTCAAAATTGTCGAAGATTTACACAAACAAAATGTCGA
ATTTTTCAGTTTGTCAGAGCGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAGATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAACGTATTTATGGGTCAAACGAGACGTGCCCAAGAAGGCTATTATCAAGGCAAT
TTACCACTAGGTTATGACAAAATACCAGATAGTAAACACGAGCTAATGATTAACCAACATGAAGCTAATATTGTAAAATA
TATATTCGAGTGCTATGCCAAAGGACATGGCTATCGTAAAATTGCCAATGCATTGAATCACAAAGGATATGTCACTAAAA
AGGGGAAACCTTTCAGTATTAGTTCAATCACATACATCTTAGCTAACCCTTTCTATATCGGCAAAATTCAATTTGCGAAA
TACAAAGATTGGAGTGAAAAACGTCGTAAAGGGCTGAATGATAAACCAGTGATAGCTGAAGGTAAGCATTCCCCCATTAT
TAATCAAGATTTATGGGATAAAGTACAAATGCGTAAGAAACAAGTCAGTCAAAAACCCCAAGTCCATGGCAAAGGAACGA
ATCTGCTTACAGGCATTATTCACTGTCCCCAATGTGGCGCACCTATGGCAGCAAGCAATACCACGAATACTCTTAAAGAC
GGGACTAAGAAACGTATTCGTTACTATTCATGTAGTAATTTTCGGAACAAGGGTTCCAAAGTATGTTCGGCAAACAGTGT
AAGAGCTGATGTGATTGAAGATTATGTGATGAAGCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTCAACGCGTAG
TAACACACGTCAATCAAGAAAATCAAGTTGATGGCGCTGCACTTCATCACGATATTGCTTATAAGCAACAACAATATGAT
GAAGTACAAATCAAAATAAATAACTTGATTAAAACCATCGAGGATAATCCGGACTTAACATCAGTAATCAGACCAAGTAT
TCAAAAATATGAAAAGCAACTCAATGACATTACGAATCAAATCAACCAACTCAAAAATCAACAAAATGAAGATAAGACTT
TATTTGATGCCAAAGAAATCAGTAAACTATTACAACACATCTTTCATGATATTAAGCACATAGAAAAATCTCGACTCAAA
GCATTGTATCTATCAGTGGTTGATCGCATTGATATTAAAAAAGATGGTAATCATAAAAAACAATTCTATGTCACACTCAA
ACTTAATAACGAAATCATTAAACAACTTTTCAATAATAAACAACTCGACGAAGTGCATCTCAGCACTTCGTCTTTATTTT
TGCCCCAAACACTATATCTTACTATTTAG

Domains

Predicted by InterProScan.

Recombinase (Recombinase)

(180-280)

Resolvase, N terminal domain (Resolvase)

(11-156)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

98.708

100

0.987