Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KP725_RS06240 Genome accession   NZ_CP076645
Coordinates   1279359..1280096 (-) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain MSI001     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1274359..1285096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP725_RS06200 (KP725_06200) - 1274446..1274742 (+) 297 WP_001519189.1 TM2 domain-containing protein -
  KP725_RS06205 (KP725_06205) - 1274935..1275132 (+) 198 WP_001353016.1 Com family DNA-binding transcriptional regulator -
  KP725_RS06210 (KP725_06210) - 1275077..1275583 (+) 507 Protein_1228 DNA methyltransferase -
  KP725_RS06215 (KP725_06215) tnpA 1275668..1276318 (+) 651 WP_000993914.1 IS66-like element accessory protein TnpA -
  KP725_RS06220 (KP725_06220) tnpB 1276318..1276665 (+) 348 WP_000624622.1 IS66 family insertion sequence element accessory protein TnpB -
  KP725_RS06225 (KP725_06225) - 1276685..1278256 (+) 1572 WP_216684096.1 IS66 family transposase -
  KP725_RS06230 (KP725_06230) - 1278287..1278595 (+) 309 Protein_1232 DNA methyltransferase -
  KP725_RS06235 (KP725_06235) raiA 1278747..1279088 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KP725_RS06240 (KP725_06240) comL 1279359..1280096 (-) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  KP725_RS06245 (KP725_06245) rluD 1280231..1281211 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KP725_RS06250 (KP725_06250) yfiH 1281208..1281939 (+) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  KP725_RS06255 (KP725_06255) clpC 1282069..1284642 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=503312 KP725_RS06240 WP_000197673.1 1279359..1280096(-) (comL) [Escherichia coli strain MSI001]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=503312 KP725_RS06240 WP_000197673.1 1279359..1280096(-) (comL) [Escherichia coli strain MSI001]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371