Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   HWI29_RS03700 Genome accession   NZ_CP064574
Coordinates   814999..815574 (+) Length   191 a.a.
NCBI ID   WP_408021413.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain UMCG356     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 809999..820574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI29_RS03675 (HWI29_03650) - 810896..812401 (+) 1506 Protein_731 bifunctional metallophosphatase/5'-nucleotidase -
  HWI29_RS03680 (HWI29_03655) - 812504..813106 (-) 603 WP_001829312.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  HWI29_RS03685 (HWI29_03660) - 813112..813297 (-) 186 WP_001829339.1 DUF2187 family protein -
  HWI29_RS03690 (HWI29_03665) - 813502..814488 (+) 987 WP_001829269.1 lipoate--protein ligase -
  HWI29_RS03695 (HWI29_03670) - 814566..814784 (-) 219 WP_001829292.1 IDEAL domain-containing protein -
  HWI29_RS03700 (HWI29_03675) comK/comK1 814999..815574 (+) 576 WP_408021413.1 competence protein ComK Regulator
  HWI29_RS03715 mobV 816633..817172 (+) 540 Protein_737 MobV family relaxase -
  HWI29_RS03720 (HWI29_03700) - 817374..817610 (+) 237 WP_001829451.1 hypothetical protein -
  HWI29_RS03725 (HWI29_03705) - 817823..818164 (+) 342 WP_002456621.1 fatty acid desaturase -
  HWI29_RS03730 (HWI29_03710) - 818168..818783 (+) 616 Protein_740 LysE/ArgO family amino acid transporter -
  HWI29_RS03735 (HWI29_03715) - 818853..819011 (-) 159 WP_001829449.1 hypothetical protein -
  HWI29_RS03740 - 819442..819558 (-) 117 WP_353616739.1 SAR1012 family small protein -
  HWI29_RS03745 (HWI29_03720) - 819662..819877 (-) 216 WP_001831694.1 TM2 domain-containing protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22764.84 Da        Isoelectric Point: 9.2887

>NTDB_id=503222 HWI29_RS03700 WP_408021413.1 814999..815574(+) (comK/comK1) [Staphylococcus epidermidis strain UMCG356]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYLVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=503222 HWI29_RS03700 WP_408021413.1 814999..815574(+) (comK/comK1) [Staphylococcus epidermidis strain UMCG356]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACCTGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.216

96.859

0.738
  comK/comK1 Staphylococcus aureus N315

76.216

96.859

0.738