Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KPA27_RS10440 Genome accession   NZ_CP076517
Coordinates   2155577..2156671 (+) Length   364 a.a.
NCBI ID   WP_044673842.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150577..2161671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS10415 (KPA27_10415) pgsA 2151096..2151635 (-) 540 WP_014736596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KPA27_RS10420 (KPA27_10420) rodZ 2151645..2152502 (-) 858 WP_024400063.1 cytoskeleton protein RodZ -
  KPA27_RS10425 (KPA27_10425) - 2152584..2153867 (-) 1284 WP_044673836.1 pitrilysin family protein -
  KPA27_RS10430 (KPA27_10430) - 2153864..2155117 (-) 1254 WP_044673839.1 pitrilysin family protein -
  KPA27_RS10435 (KPA27_10435) yaaA 2155191..2155574 (+) 384 WP_044673841.1 S4 domain-containing protein YaaA -
  KPA27_RS10440 (KPA27_10440) recF 2155577..2156671 (+) 1095 WP_044673842.1 DNA replication/repair protein RecF Machinery gene
  KPA27_RS10445 (KPA27_10445) guaB 2156940..2158421 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  KPA27_RS10450 (KPA27_10450) trpS 2158653..2159678 (-) 1026 WP_014736602.1 tryptophan--tRNA ligase -
  KPA27_RS10455 (KPA27_10455) - 2160033..2160905 (+) 873 WP_216330805.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42216.36 Da        Isoelectric Point: 7.4360

>NTDB_id=503205 KPA27_RS10440 WP_044673842.1 2155577..2156671(+) (recF) [Streptococcus suis strain 39565]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRINFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=503205 KPA27_RS10440 WP_044673842.1 2155577..2156671(+) (recF) [Streptococcus suis strain 39565]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TTATCGATGTCGAGCTAGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTAACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

69.806

99.176

0.692
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442