Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   KPA27_RS05765 Genome accession   NZ_CP076517
Coordinates   1136580..1138364 (-) Length   594 a.a.
NCBI ID   WP_202847676.1    Uniprot ID   -
Organism   Streptococcus suis strain 39565     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1131580..1143364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPA27_RS05750 (KPA27_05750) - 1134163..1134327 (-) 165 WP_002943677.1 hypothetical protein -
  KPA27_RS05755 (KPA27_05755) obgE 1134878..1136191 (-) 1314 WP_032498978.1 GTPase ObgE -
  KPA27_RS05760 (KPA27_05760) - 1136395..1136523 (-) 129 WP_002935474.1 DUF4044 domain-containing protein -
  KPA27_RS05765 (KPA27_05765) uvrC 1136580..1138364 (-) 1785 WP_202847676.1 excinuclease ABC subunit UvrC Machinery gene
  KPA27_RS05770 (KPA27_05770) - 1138873..1139616 (+) 744 WP_011922278.1 ABC transporter ATP-binding protein -
  KPA27_RS05775 (KPA27_05775) - 1139613..1141223 (+) 1611 WP_216330716.1 permease -
  KPA27_RS05780 (KPA27_05780) - 1141246..1141689 (-) 444 WP_002935466.1 VOC family protein -
  KPA27_RS05785 (KPA27_05785) ldcB 1141778..1142533 (-) 756 WP_044681910.1 LD-carboxypeptidase LdcB/DacB -

Sequence

Protein


Download         Length: 594 a.a.        Molecular weight: 68305.41 Da        Isoelectric Point: 8.8002

>NTDB_id=503166 KPA27_RS05765 WP_202847676.1 1136580..1138364(-) (uvrC) [Streptococcus suis strain 39565]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLMITRQIKKDDGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENMPSLSEYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVIKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGSVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAEKVKESLSSKDEI

Nucleotide


Download         Length: 1785 bp        

>NTDB_id=503166 KPA27_RS05765 WP_202847676.1 1136580..1138364(-) (uvrC) [Streptococcus suis strain 39565]
ATGAACGATTTGATCAAGCATAAGTTGGAGTTGCTGCCGGACAGTCCGGGTTGCTACCTCCATAAAAACAAGTACGGAAA
AATTATCTATGTGGGCAAGGCCAAAAACCTGCGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCCTTGGTATCTGAAATTGCCGACTTTGAATTTATCGTGACAGATTCCAATATCGAGGCCCTCTTACTGGAAATCAAT
CTGATTCAGGAAAACAAGCCTCGCTATAACATCATGCTCAAGGATGACAAGTCTTATCCTTTTATCAAAATTACCAAGGA
ACGCCATCCACGGTTGATGATTACACGGCAGATAAAAAAAGATGACGGTCAGTATTTTGGACCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAATTGCTGGAACGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTTTGGCCCATGGAGAAAACATGCCCAGCCTGTCTGAGTATGACAAGATGGCTAAGGAAGT
GGCCCAGTTCTTGACAGGGCATGATGATAAGATTGTCAAGGAAGTCCAGGACAAGATGAAAGCTGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCAGAATACCGAGATGTCCTGCAATCCATTTCCACCCTGCGGACCAAGCAACGTGTGATGGCTCAT
GACTTGCAAAATCGGGATGTCTTTGGCTACTATGTGGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGAAATGTCAATCTTTTTCCATACTACAATGATGCGGACGAAGACTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCAGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTAGATACCAAGGTCATCAAGCCCCAGCGTGGCGAGAAGAAGCAGCTCATCAATCTGGCGACCAAGAATGCGCGTGTCAG
TCTGGAGCAGAAGTTTAATCTCTTGGAGAAAAATCTGGAGAAGACCTACGGTTCTGTGGAGAATATCGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTTGACAACTCCAACATCATGGGGACCAGTCCTGTGTCGGCTATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAGGAATACCGCAAGTATAAGATTAAGACGGTGGAGGGGCCAGATGATTATGCATC
CATGCGGGAAGTTTTGCAGCGGCGGTACAGTCGGGTGCTGCGGGACGGTTTGACACCGCCTGATTTGATTATCATTGACG
GTGGTCAGGGGCAGGTCAATGTCGCCAAGCAGGTCATCGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTGCAG
AAGAATGACAAGCACCAGACACACGAGTTGCTCTTTGGCAATCCGTTGGAAGTAGTTGAATTACCTCGCAATTCACAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAGGTGCACCGCTTTGCTATTGAGTTTCATCGTCAGGTTCGGTCAAAAAATT
CCTTCTCATCCAAATTGGACGGCATAGAAGGCTTGGGACCAAAACGCAAGCAGGCTTTGATGAAACACTTCAAATCAATT
GGCAATATCCAGTCGGCCAGTCTACAAGAAATTGCAGAAGCAGGAGTGCCGTATAAAGTAGCGGAAAAGGTCAAGGAAAG
CCTTTCTTCAAAGGATGAGATTTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(196-229)

Helix-hairpin-helix domain (HHH_5)

(538-588)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

76.728

99.832

0.766
  uvrC Streptococcus pneumoniae R6

76.391

99.832

0.763
  uvrC Streptococcus pneumoniae D39

76.391

99.832

0.763