Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KPF77_RS05710 Genome accession   NZ_CP076510
Coordinates   1122100..1122648 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain R19.0802     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1117100..1127648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPF77_RS05675 (KPF77_05675) - 1117264..1117689 (+) 426 WP_216200769.1 N-acetyltransferase -
  KPF77_RS05680 (KPF77_05680) - 1117753..1118373 (+) 621 WP_216200771.1 nitroreductase family protein -
  KPF77_RS05685 (KPF77_05685) - 1118373..1118978 (+) 606 WP_002777066.1 NAD(P)H-dependent oxidoreductase -
  KPF77_RS05690 (KPF77_05690) pgsA 1119129..1119665 (+) 537 WP_002777068.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KPF77_RS05695 (KPF77_05695) rseP 1119662..1120768 (+) 1107 WP_069284840.1 RIP metalloprotease RseP -
  KPF77_RS05700 (KPF77_05700) - 1120761..1121627 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  KPF77_RS05705 (KPF77_05705) rpsF 1121714..1122091 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  KPF77_RS05710 (KPF77_05710) ssb 1122100..1122648 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  KPF77_RS05715 (KPF77_05715) rpsR 1122659..1122919 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  KPF77_RS05720 (KPF77_05720) lon 1122976..1125351 (-) 2376 WP_002812867.1 endopeptidase La -
  KPF77_RS05725 (KPF77_05725) - 1125367..1126014 (-) 648 WP_057991422.1 outer membrane protein assembly factor BamD -
  KPF77_RS05730 (KPF77_05730) fliW 1126178..1126567 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  KPF77_RS05735 (KPF77_05735) proC 1126567..1127304 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  KPF77_RS05740 (KPF77_05740) ctsT 1127301..1127606 (+) 306 WP_002777852.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=503035 KPF77_RS05710 WP_002777084.1 1122100..1122648(+) (ssb) [Campylobacter coli strain R19.0802]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=503035 KPF77_RS05710 WP_002777084.1 1122100..1122648(+) (ssb) [Campylobacter coli strain R19.0802]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GCTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379