Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HWI39_RS08625 Genome accession   NZ_CP064543
Coordinates   1791772..1792644 (-) Length   290 a.a.
NCBI ID   WP_001829468.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain UMCG366     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1786772..1797644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI39_RS08610 (HWI39_08560) xerC 1787073..1787933 (-) 861 WP_002439503.1 tyrosine recombinase XerC -
  HWI39_RS08615 (HWI39_08565) trmFO 1788188..1789495 (-) 1308 WP_001832560.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HWI39_RS08620 (HWI39_08570) topA 1789520..1791589 (-) 2070 WP_001829508.1 type I DNA topoisomerase -
  HWI39_RS08625 (HWI39_08575) dprA 1791772..1792644 (-) 873 WP_001829468.1 DNA-processing protein DprA Machinery gene
  HWI39_RS08630 (HWI39_08580) sucD 1793450..1794358 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  HWI39_RS08635 (HWI39_08585) sucC 1794380..1795546 (-) 1167 WP_002456569.1 ADP-forming succinate--CoA ligase subunit beta -
  HWI39_RS08640 (HWI39_08590) - 1795654..1796424 (-) 771 WP_001829514.1 ribonuclease HII -
  HWI39_RS08645 (HWI39_08595) ylqF 1796429..1797292 (-) 864 WP_001829495.1 ribosome biogenesis GTPase YlqF -
  HWI39_RS08650 (HWI39_08600) - 1797313..1797462 (-) 150 WP_162154119.1 hypothetical protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33726.62 Da        Isoelectric Point: 9.3618

>NTDB_id=502904 HWI39_RS08625 WP_001829468.1 1791772..1792644(-) (dprA) [Staphylococcus epidermidis strain UMCG366]
MIQHTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=502904 HWI39_RS08625 WP_001829468.1 1791772..1792644(-) (dprA) [Staphylococcus epidermidis strain UMCG366]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

56.944

99.31

0.566
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566