Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HWI41_RS07640 Genome accession   NZ_CP064536
Coordinates   1633438..1634313 (-) Length   291 a.a.
NCBI ID   WP_237632063.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain UMCG368     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1628438..1639313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI41_RS07625 (HWI41_07585) xerC 1628743..1629603 (-) 861 WP_373276798.1 tyrosine recombinase XerC -
  HWI41_RS07630 (HWI41_07590) trmFO 1629857..1631164 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HWI41_RS07635 (HWI41_07595) topA 1631189..1633258 (-) 2070 WP_145333737.1 type I DNA topoisomerase -
  HWI41_RS07640 (HWI41_07600) dprA 1633438..1634313 (-) 876 WP_237632063.1 DNA-processing protein DprA Machinery gene
  HWI41_RS07645 - 1634638..1634738 (-) 101 Protein_1469 IS200/IS605 family transposase -
  HWI41_RS07650 - 1634796..1634907 (-) 112 Protein_1470 IS200/IS605 family transposase -
  HWI41_RS07655 (HWI41_07605) sucD 1635104..1636012 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  HWI41_RS07660 (HWI41_07610) sucC 1636034..1637200 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  HWI41_RS07665 (HWI41_07615) - 1637308..1638078 (-) 771 WP_060545821.1 ribonuclease HII -
  HWI41_RS07670 (HWI41_07620) ylqF 1638083..1638946 (-) 864 WP_060545823.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33946.10 Da        Isoelectric Point: 9.8284

>NTDB_id=502831 HWI41_RS07640 WP_237632063.1 1633438..1634313(-) (dprA) [Staphylococcus epidermidis strain UMCG368]
MIQHTMLKLYWANFTTAQLHHLTRKYPGFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQIVIDESSILIDYLFM

Nucleotide


Download         Length: 876 bp        

>NTDB_id=502831 HWI41_RS07640 WP_237632063.1 1633438..1634313(-) (dprA) [Staphylococcus epidermidis strain UMCG368]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGGCTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAATTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTATGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.292

98.969

0.567
  dprA Staphylococcus aureus N315

57.292

98.969

0.567