Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HWI41_RS03990 Genome accession   NZ_CP064536
Coordinates   859695..860090 (+) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain UMCG368     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 854695..865090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI41_RS03965 (HWI41_03930) - 856114..856518 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  HWI41_RS03970 (HWI41_03935) - 856667..856900 (+) 234 WP_002495678.1 DUF1146 family protein -
  HWI41_RS03975 (HWI41_03940) murA 857010..858275 (+) 1266 WP_002447780.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  HWI41_RS03980 (HWI41_03945) fabZ 858309..858746 (+) 438 WP_002447779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  HWI41_RS03985 (HWI41_03950) - 859064..859504 (-) 441 WP_002458706.1 YwpF-like family protein -
  HWI41_RS03990 (HWI41_03955) ssb 859695..860090 (+) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  HWI41_RS03995 (HWI41_03960) - 860478..861137 (+) 660 WP_002447776.1 transglycosylase family protein -
  HWI41_RS04000 (HWI41_03965) tenA 861421..862110 (+) 690 WP_002447775.1 thiaminase II -
  HWI41_RS04005 (HWI41_03970) thiD 862103..862924 (+) 822 WP_002458705.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  HWI41_RS04010 (HWI41_03975) thiM 862917..863705 (+) 789 WP_002486939.1 hydroxyethylthiazole kinase -
  HWI41_RS04015 (HWI41_03980) thiE 863711..864349 (+) 639 WP_002458704.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=502813 HWI41_RS03990 WP_002447777.1 859695..860090(+) (ssb) [Staphylococcus epidermidis strain UMCG368]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=502813 HWI41_RS03990 WP_002447777.1 859695..860090(+) (ssb) [Staphylococcus epidermidis strain UMCG368]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733