Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HWI43_RS07650 Genome accession   NZ_CP064528
Coordinates   1634524..1635399 (-) Length   291 a.a.
NCBI ID   WP_237632063.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain UMCG370     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1629524..1640399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWI43_RS07635 (HWI43_07580) xerC 1629829..1630689 (-) 861 WP_373276798.1 tyrosine recombinase XerC -
  HWI43_RS07640 (HWI43_07585) trmFO 1630943..1632250 (-) 1308 WP_002473845.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HWI43_RS07645 (HWI43_07590) topA 1632275..1634344 (-) 2070 WP_145333737.1 type I DNA topoisomerase -
  HWI43_RS07650 (HWI43_07595) dprA 1634524..1635399 (-) 876 WP_237632063.1 DNA-processing protein DprA Machinery gene
  HWI43_RS07655 - 1635724..1635824 (-) 101 Protein_1471 IS200/IS605 family transposase -
  HWI43_RS07660 - 1635882..1635993 (-) 112 Protein_1472 IS200/IS605 family transposase -
  HWI43_RS07665 (HWI43_07600) sucD 1636190..1637098 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  HWI43_RS07670 (HWI43_07605) sucC 1637120..1638286 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  HWI43_RS07675 (HWI43_07610) - 1638394..1639164 (-) 771 WP_060545821.1 ribonuclease HII -
  HWI43_RS07680 (HWI43_07615) ylqF 1639169..1640032 (-) 864 WP_060545823.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33946.10 Da        Isoelectric Point: 9.8284

>NTDB_id=502759 HWI43_RS07650 WP_237632063.1 1634524..1635399(-) (dprA) [Staphylococcus epidermidis strain UMCG370]
MIQHTMLKLYWANFTTAQLHHLTRKYPGFLSENVFHQHDMIKRWLTERNSERLWNKYERFKKLKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYFLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQIVIDESSILIDYLFM

Nucleotide


Download         Length: 876 bp        

>NTDB_id=502759 HWI43_RS07650 WP_237632063.1 1634524..1635399(-) (dprA) [Staphylococcus epidermidis strain UMCG370]
TTGATACAACATACGATGTTAAAACTATATTGGGCAAATTTCACTACAGCACAACTTCATCATCTTACACGTAAATATCC
CGGCTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGACTAT
GGAACAAATATGAACGTTTCAAAAAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACG
ACATACTTCGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTCTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGTGGCGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACTTTTTACCAACTATTGGCGTACTTGGATTTGGACATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGAAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCCATAAATAAGTATAAATTTC
CTGAAAGAAACAGACTTATAAGTGGTCTGTCTAGAGGGGTTCTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATT
ACTATTGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGCAA
TTTACGAAGGATAAATGAAGGTGCTCAAATTGTTATAGATGAAAGTAGTATCTTAATTGATTATCTATTTATGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

57.292

98.969

0.567
  dprA Staphylococcus aureus N315

57.292

98.969

0.567