Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   KME66_RS24610 Genome accession   NZ_CP076457
Coordinates   5594016..5595107 (+) Length   363 a.a.
NCBI ID   WP_073217017.1    Uniprot ID   -
Organism   Streptomyces sp. YPW6     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5589016..5600107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME66_RS24600 (KME66_24600) - 5590504..5591763 (+) 1260 WP_216326004.1 NAD(P)/FAD-dependent oxidoreductase -
  KME66_RS24605 (KME66_24605) dnaG 5591877..5593808 (+) 1932 WP_073217015.1 DNA primase -
  KME66_RS24610 (KME66_24610) rpoS 5594016..5595107 (+) 1092 WP_073217017.1 RNA polymerase sigma factor Regulator
  KME66_RS24615 (KME66_24615) - 5595230..5597158 (-) 1929 WP_073217019.1 ABC transporter ATP-binding protein -
  KME66_RS24620 (KME66_24620) rcrP 5597158..5598891 (-) 1734 WP_216326007.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40497.19 Da        Isoelectric Point: 6.1969

>NTDB_id=502686 KME66_RS24610 WP_073217017.1 5594016..5595107(+) (rpoS) [Streptomyces sp. YPW6]
MQTRTVTTTTAPVAAIPAQNRALHHPETAAGPPGPAPEAVMVEATHLPEPPDPRNRADSGGPTSDLFRQYLREIGRIPLL
SAAEEVELARRVEAGLFAEERLAGTPDLDSRLAVDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLDDGR
PRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=502686 KME66_RS24610 WP_073217017.1 5594016..5595107(+) (rpoS) [Streptomyces sp. YPW6]
GTGCAGACCCGGACCGTGACGACCACGACCGCGCCCGTGGCGGCCATCCCCGCGCAGAACAGGGCCCTGCACCACCCGGA
GACCGCAGCCGGCCCGCCCGGACCCGCACCCGAGGCGGTCATGGTGGAAGCGACGCACCTCCCCGAACCGCCGGACCCCA
GGAACCGGGCGGACTCCGGCGGCCCCACCTCCGACCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATCCCGCTGCTC
TCCGCCGCCGAGGAGGTCGAGCTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAACGCCTCGCCGGCACCCCGGA
CCTCGACTCCCGCCTCGCCGTGGACCTGGACCGGCTGGTGGTGATGGGCCGCACCGCCAAGCGCCGCCTCATCGAGGCCA
ACCTGCGCCTCGTCGTCTCCGTCGCCAAACGCTACGTGGGCCGCGGGCTGACCATGCTCGACCTCGTCCAGGAGGGGAAC
CTCGGTCTGATCCGGGCCGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCG
CCAGGCGATGTCCCGCGCCCTGGCCGACCAGGCCCGCACCATCCGCGTCCCCGTCCACGTCGTGGAACTGATCAACCGCG
TGGTCCGTGTGCAGCGCCGCCTCCTTCAGGAGCGCGGCGTCGAACCGACCGCCGAGGACATCGCCGTCGAGCTGGACCTG
ACCCCCGAGCGGGTCACCGAAGTCCTCCGCCTGGCCCAGGAGCCGGTCTCCCTGCACGCCCCCGTCGGGGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCGCGTCCCCCGTCGAGTCCGCCGCCTTCCTGCTGCTGCGCCAGC
ACCTGGAGGCGGTGCTCTCCACGCTCGGCGAGCGCGAACGCAAGGTCGTCCAGCTGCGCTACGGCCTGGACGACGGGCGG
CCTCGCACCCTGGAGGAGATAGGACGGATCTTCGGCGTGACACGCGAACGTATCCGCCAGATCGAGTCCAAGACCCTCAG
CAGACTGCGGGACCACGCCTTCGCCGACCAGCTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 region 2 (Sigma70_r2)

(130-199)

Sigma-70 region 3 (Sigma70_r3)

(209-285)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(65-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.21

95.592

0.394