Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KME66_RS24620 Genome accession   NZ_CP076457
Coordinates   5597158..5598891 (-) Length   577 a.a.
NCBI ID   WP_216326007.1    Uniprot ID   -
Organism   Streptomyces sp. YPW6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5592158..5603891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME66_RS24610 (KME66_24610) rpoS 5594016..5595107 (+) 1092 WP_073217017.1 RNA polymerase sigma factor Regulator
  KME66_RS24615 (KME66_24615) - 5595230..5597158 (-) 1929 WP_073217019.1 ABC transporter ATP-binding protein -
  KME66_RS24620 (KME66_24620) rcrP 5597158..5598891 (-) 1734 WP_216326007.1 ABC transporter ATP-binding protein Regulator
  KME66_RS24625 (KME66_24625) - 5599236..5600687 (-) 1452 WP_073217023.1 FGGY family carbohydrate kinase -
  KME66_RS24630 (KME66_24630) - 5600809..5601114 (-) 306 WP_006124242.1 hypothetical protein -
  KME66_RS24650 (KME66_24650) - 5602179..5602412 (+) 234 WP_028426397.1 type II toxin-antitoxin system VapB family antitoxin -
  KME66_RS24655 (KME66_24655) - 5602409..5602816 (+) 408 WP_124265741.1 PIN domain nuclease -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62209.26 Da        Isoelectric Point: 5.3704

>NTDB_id=502687 KME66_RS24620 WP_216326007.1 5597158..5598891(-) (rcrP) [Streptomyces sp. YPW6]
MLIQLLRAHLGPYKKPIVLLVLLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVVQVLCNVGAVYFGA
RTAAALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLVLLAFTLMVSAPIMCVGGIIMALGLDVPLSAV
LLAVVPVLGVSVGLIVRRMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTGSSVTP
PVAPVTELRRHGHLEVRGAEFRYPGAEEPVLRNIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPALLARTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVQALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGAGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=502687 KME66_RS24620 WP_216326007.1 5597158..5598891(-) (rcrP) [Streptomyces sp. YPW6]
GTGCTCATACAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTCCTCCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTACCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTCACGGGCGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTCGTGCAGGTGCTGTGCAACGTGGGGGCCGTGTACTTCGGGGCC
CGCACCGCCGCCGCCCTCGGGCGTGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCAGGGAGCTGGG
GCGTTTCGGGGCTCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGCTGGCGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGGATCATCATGGCGCTCGGCCTCGACGTGCCGCTCTCCGCCGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGTGTCTCGGTCGGCCTCATCGTGCGGAGGATGGGTCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTCCGGGACG
GGTACGAGGAGAAGCGCTTCCGGGGCGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCGCACCGCATTGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCGGGTCGAGCGTCACTCCG
CCCGTCGCGCCCGTCACCGAGCTGCGGCGGCACGGGCACCTGGAGGTGCGGGGCGCGGAGTTCCGGTACCCGGGAGCGGA
GGAACCGGTGCTGCGGAACATCGATCTGGTGGCGCGGCCCGGGGAGACCACCGCGGTCATCGGGTCCACGGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGCGCTGCTGGCGAGGACGGTGTCCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGAGCGACGAGGAGCTGTGGCACGCGTTGGAGGTGGCGCAGGCGAAGGAGTTCG
TCCAGGCGCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGCCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGTTGGACGAGGGTCGGCTCGTGGGCGCCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.28

100

0.397