Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   KME66_RS19090 Genome accession   NZ_CP076457
Coordinates   4294896..4296317 (-) Length   473 a.a.
NCBI ID   WP_073226325.1    Uniprot ID   -
Organism   Streptomyces sp. YPW6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4289896..4301317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KME66_RS19070 (KME66_19070) - 4290469..4291131 (-) 663 WP_216324023.1 SigE family RNA polymerase sigma factor -
  KME66_RS19075 (KME66_19075) - 4291393..4292307 (-) 915 WP_216324027.1 A/G-specific adenine glycosylase -
  KME66_RS19080 (KME66_19080) - 4292612..4293346 (+) 735 WP_216324030.1 hypothetical protein -
  KME66_RS19085 (KME66_19085) disA 4293691..4294815 (-) 1125 WP_073225728.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  KME66_RS19090 (KME66_19090) radA/sms 4294896..4296317 (-) 1422 WP_073226325.1 DNA repair protein RadA Machinery gene
  KME66_RS19095 (KME66_19095) - 4296551..4298485 (+) 1935 WP_216324033.1 hypothetical protein -
  KME66_RS19100 (KME66_19100) - 4298838..4299701 (-) 864 WP_073225724.1 hypothetical protein -
  KME66_RS19105 (KME66_19105) - 4299741..4300691 (+) 951 WP_073225722.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 49904.08 Da        Isoelectric Point: 8.4965

>NTDB_id=502675 KME66_RS19090 WP_073226325.1 4294896..4296317(-) (radA/sms) [Streptomyces sp. YPW6]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRTATARSTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LAHLDEVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDVAVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLTEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRVPAGMKVTEVADMGDALRVLPRRSRQEAPQPRQEDNTRR

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=502675 KME66_RS19090 WP_073226325.1 4294896..4296317(-) (radA/sms) [Streptomyces sp. YPW6]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGTTGCCCCGAGTGCCAGGCCTGGGGGACGGTGGAGGAGTTCGGCGGCGCCCCCGCCGTACGCACGACCGCGGCGG
GCCGGGTCTCCACCGCCGCGCTGCCGATCGGCCAGGTCGACAGCCGGACGGCCACCGCGCGCTCCACCGGCGTCGGCGAG
CTCGACCGGGTGCTGGGCGGCGGGCTGGTGCCGGGCGCGGTCGTTCTGCTGGCGGGCGAGCCGGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTGGCGGCCAAGGCGGCGAGCGACGCCCACCGCACGCTGTACGTGACCGCCGAGGAGTCCGCGAGCC
AGGTCCGGCTGCGGGCCGACCGGATCAGGGCGATCAACGACCACCTCTACCTCGCGGCGGAGACGGACCTGTCGGCGGTG
CTCGCGCATCTGGACGAGGTCAAGCCGTCGCTGCTGATCCTGGACTCGGTGCAGACGGTCGCCTCGCCCGAGATCGACGG
CGCGCCCGGCGGGATGGCCCAGGTCCGGGAGGTGGCCGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGC
TGCTCGTCGGCCACGTCACCAAGGACGGCGCGATCGCCGGGCCCCGGCTGCTGGAGCACCTGGTGGACGTGGTGCTGTCC
TTCGAGGGCGACCGGCACGCCCGGCTGCGGCTGGTGCGCGGCGTCAAGAACCGCTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGTCTCGCCGACCCCTCGGGCCTGTTCCTGACCCGCCGCGACGTCGCCGTGC
CGGGCACCTGCCTGACGGTGACGCTGGAGGGCAAGCGGCCCCTGGTCGCCGAGGTCCAGGCGCTCACCGTGGACTCGCAG
ATCCCCTCGCCCCGGCGCACGACCTCCGGCCTGGAGACCTCCCGGGTCTCCATGATGCTCGCCGTGCTGGAGCAGCGGGG
CCGGATCAGCGCGCTCGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTCACCGAGCCCGCCGCCGACC
TGGCGGTCGCCCTCGCGCTGGCCAGCGCGGCCAGCGACACCCCGCTCCCGAAGAACCTCGTCGCGATCGGCGAGGTGGGG
CTCGCGGGCGAGGTCAGAAGGGTCACCGGGGTGCAGCGGAGGCTGGCCGAGGCCCATCGTCTGGGCTTCACCCACGCCCT
CGTACCGACCGACCCGGGGAGGGTCCCGGCCGGTATGAAGGTCACGGAAGTCGCCGACATGGGCGACGCCCTGCGGGTCC
TCCCGCGCCGCTCTCGCCAGGAGGCGCCGCAGCCTCGTCAGGAAGACAACACGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(85-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(371-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.709

95.772

0.419
  radA Streptococcus pneumoniae Rx1

44.755

90.698

0.406
  radA Streptococcus pneumoniae D39

44.755

90.698

0.406
  radA Streptococcus pneumoniae R6

44.755

90.698

0.406
  radA Streptococcus pneumoniae TIGR4

44.755

90.698

0.406
  radA Streptococcus mitis SK321

44.755

90.698

0.406
  radA Streptococcus mitis NCTC 12261

44.522

90.698

0.404