Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KO461_RS02390 Genome accession   NZ_CP076449
Coordinates   462940..463749 (+) Length   269 a.a.
NCBI ID   WP_005564718.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457940..468749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS02380 (KO461_02375) - 459298..460143 (-) 846 WP_205764647.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  KO461_RS02385 (KO461_02380) - 460239..462806 (-) 2568 WP_005564721.1 penicillin-binding protein 1A -
  KO461_RS02390 (KO461_02385) comA 462940..463749 (+) 810 WP_005564718.1 hypothetical protein Machinery gene
  KO461_RS02395 (KO461_02390) - 463760..464278 (+) 519 WP_005564716.1 PilN domain-containing protein -
  KO461_RS02400 (KO461_02395) - 464275..464799 (+) 525 WP_005543969.1 hypothetical protein -
  KO461_RS02405 (KO461_02400) - 464799..465191 (+) 393 WP_205764648.1 competence protein ComD -
  KO461_RS02410 (KO461_02405) comE 465212..466621 (+) 1410 WP_005564712.1 type IV pilus secretin PilQ Machinery gene
  KO461_RS02415 (KO461_02410) aroK 466835..467362 (+) 528 WP_005543963.1 shikimate kinase AroK -
  KO461_RS02420 (KO461_02415) aroB 467386..468474 (+) 1089 WP_005564710.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 31289.86 Da        Isoelectric Point: 6.0632

>NTDB_id=502591 KO461_RS02390 WP_005564718.1 462940..463749(+) (comA) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MFIRHIPTLQVGLWCRGETIDAAWIDPQNQPHFLRLGELELMELTSHLNRRFNHPHKKLAYKFITAIMPHQIWQKTLILP
HNLNLQECEQQCHFSLTNELPIPTEEVWYDYAATPLKQGFRLDIFAIRQQIATEYLQQLIPLQIDVLDNAAKAMLRAAEY
FLGHALPNNAVFLYQDETGLLAVQHKLQQTQTLFQTQGNLTALLAQYCQRYAEEPMQVFYYQTEKDAQAIPQSWHAIETE
LPFIALGNALWQRETPLKSTALFDADHNI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=502591 KO461_RS02390 WP_005564718.1 462940..463749(+) (comA) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGTTTATTAGACACATTCCCACACTGCAAGTCGGTCTTTGGTGCCGTGGAGAAACCATCGACGCAGCGTGGATCGACCC
GCAAAATCAACCGCACTTTTTGCGCCTCGGCGAACTGGAATTAATGGAACTGACAAGCCATTTAAACCGTCGTTTTAACC
ATCCGCACAAAAAATTAGCCTACAAATTTATTACCGCCATCATGCCCCATCAAATCTGGCAGAAAACCTTGATTTTGCCC
CATAACCTGAACCTTCAGGAATGTGAGCAACAGTGCCATTTCAGCTTAACCAACGAGCTGCCGATTCCCACCGAAGAAGT
GTGGTATGACTACGCCGCCACACCGTTAAAACAGGGCTTTCGGTTAGATATTTTTGCCATTAGACAACAAATCGCCACAG
AATATTTGCAACAACTTATACCTTTACAAATTGATGTGTTGGACAACGCGGCAAAAGCGATGTTACGCGCGGCGGAATAT
TTTTTGGGGCACGCCTTGCCAAATAACGCCGTGTTTTTATATCAGGACGAAACGGGCTTGCTGGCGGTACAACACAAATT
ACAGCAAACCCAAACGCTGTTCCAAACGCAGGGAAACCTGACCGCACTTTTGGCGCAATATTGCCAACGTTATGCAGAAG
AACCGATGCAGGTGTTCTATTATCAAACCGAAAAAGACGCACAGGCGATACCGCAAAGCTGGCACGCCATTGAAACCGAG
CTACCGTTCATCGCGTTAGGTAACGCCTTGTGGCAACGGGAAACGCCGTTGAAATCCACCGCACTTTTTGACGCCGACCA
CAACATTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

40.541

96.283

0.39
  comA Haemophilus influenzae 86-028NP

40.541

96.283

0.39