Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   HBHAL_RS12020 Genome accession   NC_017668
Coordinates   2438075..2439802 (-) Length   575 a.a.
NCBI ID   WP_014643701.1    Uniprot ID   I0JNU2
Organism   Halobacillus halophilus DSM 2266     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2433075..2444802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBHAL_RS12000 (HBHAL_3465) - 2433617..2434966 (-) 1350 WP_014643698.1 aspartate kinase -
  HBHAL_RS12005 - 2435167..2435442 (+) 276 WP_145956043.1 hypothetical protein -
  HBHAL_RS12010 (HBHAL_3466) spo0A 2435600..2436379 (-) 780 WP_014643699.1 sporulation transcription factor Spo0A -
  HBHAL_RS12015 (HBHAL_3467) spoIVB 2436598..2437842 (-) 1245 WP_014643700.1 SpoIVB peptidase -
  HBHAL_RS12020 (HBHAL_3468) recN 2438075..2439802 (-) 1728 WP_014643701.1 DNA repair protein RecN Machinery gene
  HBHAL_RS12025 (HBHAL_3469) ahrC 2439820..2440269 (-) 450 WP_014643702.1 transcriptional regulator AhrC/ArgR -
  HBHAL_RS12030 (HBHAL_3470) - 2440333..2441145 (-) 813 WP_014643703.1 TlyA family RNA methyltransferase -
  HBHAL_RS12035 (HBHAL_3471) dxs 2441149..2443041 (-) 1893 WP_014643704.1 1-deoxy-D-xylulose-5-phosphate synthase -
  HBHAL_RS12040 (HBHAL_3472) - 2443060..2443659 (-) 600 WP_014643705.1 hypothetical protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65364.65 Da        Isoelectric Point: 4.7513

>NTDB_id=50257 HBHAL_RS12020 WP_014643701.1 2438075..2439802(-) (recN) [Halobacillus halophilus DSM 2266]
MLTELSIRDFAIIDHISITFKEGLTVLTGETGAGKSIIIDAIQLLSGGRGSVEFVRHGAKKAEIEGLFTVEADHPIHSKT
EQFGVDISEDGMVVLNRAITHQGKSICRVNGKLVTLGILKEFGRALIDIHSQHETQSLMDPERHIELLDLFASSEMKSSM
QEYRRVYEKYRTLVNRYKELSENEQEMAQRLDLLEFQLHELQEAELQPKEDEELSEERTKLNNYEKIYQGIHDAYYSLYG
EQKGLDWLSHAMTSLESTGDFDDSLAKMSEELSNSYYLIEELTFQLSSQMENLEFDPERLNQIESRLNELNRLKKKYGAD
VEEMLEYASRIEEEIDEIKNKDSRLANMESQIDELGQDAVLEAKDLHDIRKHVSELLAGYIHDELKDLYLEKAAFDVDIS
IKEGKQSDPVLDGKPVRLQSNGFDHVKFLITTNPGEPLREIHKVASGGEMSRIMLALKRIFSRHQGVTSVIFDEVDTGVS
GRVAQAIAEKIYGISEGSQVLCISHLPQVAAMADTHVRIEKRVDNDRTYTGVSELSHQEKADELSRMITGAELTETTLEH
ARELLEMAHKHKLNK

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=50257 HBHAL_RS12020 WP_014643701.1 2438075..2439802(-) (recN) [Halobacillus halophilus DSM 2266]
ATGCTAACTGAATTATCAATTCGTGACTTTGCAATCATCGATCATATTTCAATCACTTTTAAGGAAGGTTTGACAGTATT
AACAGGTGAAACAGGAGCTGGTAAGTCAATTATCATTGATGCCATACAATTATTATCCGGTGGAAGAGGCTCAGTGGAGT
TTGTACGGCATGGAGCAAAAAAAGCCGAAATTGAAGGTTTATTTACCGTGGAAGCGGATCATCCTATTCATAGCAAGACG
GAACAATTCGGTGTAGATATTAGTGAAGATGGAATGGTCGTTCTTAATCGGGCAATTACTCATCAAGGGAAAAGTATTTG
CCGGGTTAACGGTAAATTAGTAACTCTTGGGATACTAAAAGAATTTGGCCGGGCTCTGATTGATATCCATAGTCAACATG
AGACGCAATCGCTAATGGATCCGGAGAGACACATTGAACTTCTGGATTTATTTGCTTCCTCAGAAATGAAGTCTTCTATG
CAGGAGTACCGCCGTGTTTATGAAAAATATCGTACGTTGGTGAATCGATATAAAGAACTAAGTGAAAATGAACAAGAAAT
GGCTCAGCGACTTGATCTTTTAGAGTTTCAGCTTCATGAACTTCAAGAAGCGGAACTTCAACCGAAAGAAGATGAGGAAT
TAAGTGAAGAACGAACTAAATTAAATAATTATGAAAAGATTTATCAAGGTATCCATGATGCTTACTATTCTTTATATGGA
GAGCAAAAAGGTCTGGATTGGTTAAGTCACGCGATGACTTCTTTGGAAAGCACAGGTGATTTTGATGACAGTCTGGCTAA
AATGTCAGAAGAGCTTTCCAATTCGTATTACTTAATCGAGGAATTGACCTTTCAATTAAGTTCACAAATGGAGAACCTGG
AGTTTGATCCTGAACGGTTAAATCAAATTGAATCCAGATTGAATGAATTGAATCGATTAAAGAAGAAGTATGGTGCAGAC
GTCGAGGAGATGCTGGAATATGCATCCAGAATAGAGGAAGAGATAGACGAGATTAAAAATAAAGATTCACGACTTGCCAA
TATGGAAAGTCAAATTGATGAACTGGGGCAGGACGCGGTATTAGAGGCGAAGGATCTGCATGATATTCGGAAGCATGTTT
CAGAATTATTAGCTGGTTATATTCATGATGAGCTAAAGGATTTATATTTGGAAAAAGCTGCTTTCGATGTTGATATTTCT
ATAAAAGAAGGAAAACAGTCTGATCCTGTCCTGGATGGTAAACCAGTCCGTTTGCAATCGAATGGTTTTGACCATGTTAA
ATTTTTAATTACGACTAATCCAGGGGAACCTCTAAGAGAAATACATAAAGTAGCTTCCGGAGGGGAAATGTCTAGAATTA
TGCTTGCTCTCAAACGCATTTTCTCACGACATCAAGGAGTAACAAGCGTCATTTTTGATGAAGTGGATACAGGAGTAAGC
GGCCGCGTGGCTCAAGCTATAGCTGAAAAAATTTATGGAATATCAGAAGGTTCTCAGGTTCTTTGTATTTCTCATTTACC
TCAAGTGGCTGCGATGGCAGATACTCATGTAAGAATTGAAAAACGAGTAGATAATGATCGTACTTACACCGGGGTTTCGG
AATTGTCTCATCAGGAAAAAGCTGATGAGTTATCTCGCATGATTACAGGAGCTGAATTGACGGAGACAACTCTTGAGCAT
GCAAGAGAATTGTTAGAGATGGCACATAAACATAAATTAAATAAATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0JNU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

56.272

99.826

0.562

Multiple sequence alignment