Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KM937_RS16610 Genome accession   NZ_CP076344
Coordinates   3435429..3436166 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain AVS0096     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3430429..3441166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KM937_RS16595 (KM937_16595) clpC 3430883..3433456 (-) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator
  KM937_RS16600 (KM937_16600) yfiH 3433586..3434317 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  KM937_RS16605 (KM937_16605) rluD 3434314..3435294 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KM937_RS16610 (KM937_16610) comL 3435429..3436166 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  KM937_RS16615 (KM937_16615) raiA 3436436..3436777 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KM937_RS16620 (KM937_16620) pheL 3436881..3436928 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  KM937_RS16625 (KM937_16625) pheA 3437027..3438187 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  KM937_RS16630 (KM937_16630) tyrA 3438230..3439351 (-) 1122 WP_001539387.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KM937_RS16635 (KM937_16635) aroF 3439362..3440432 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KM937_RS16640 (KM937_16640) yfiL 3440642..3441007 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=502240 KM937_RS16610 WP_000197686.1 3435429..3436166(+) (comL) [Escherichia coli strain AVS0096]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=502240 KM937_RS16610 WP_000197686.1 3435429..3436166(+) (comL) [Escherichia coli strain AVS0096]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376