Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   IUJ40_RS11635 Genome accession   NZ_CP064389
Coordinates   2295076..2295645 (-) Length   189 a.a.
NCBI ID   WP_023487095.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PartE-Saureus-RM8376     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2290076..2300645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ40_RS11595 (IUJ40_11580) - 2290550..2291158 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  IUJ40_RS11600 (IUJ40_11585) rplL 2291333..2291701 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  IUJ40_RS11605 (IUJ40_11590) rplJ 2291744..2292244 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  IUJ40_RS11610 (IUJ40_11595) rplA 2292516..2293208 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  IUJ40_RS11615 (IUJ40_11600) rplK 2293416..2293838 (-) 423 WP_001085794.1 50S ribosomal protein L11 -
  IUJ40_RS11620 (IUJ40_11605) nusG 2294019..2294567 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  IUJ40_RS11625 (IUJ40_11610) secE 2294580..2294762 (-) 183 WP_001074474.1 preprotein translocase subunit SecE -
  IUJ40_RS11630 (IUJ40_11615) rpmG 2294818..2294961 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  IUJ40_RS11635 (IUJ40_11620) sigH 2295076..2295645 (-) 570 WP_023487095.1 sigma-70 family RNA polymerase sigma factor Regulator
  IUJ40_RS11640 (IUJ40_11625) - 2295726..2296250 (-) 525 WP_000664738.1 NYN domain-containing protein -
  IUJ40_RS11645 (IUJ40_11630) rlmB 2296250..2296996 (-) 747 WP_000390328.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IUJ40_RS11650 (IUJ40_11635) - 2297004..2297408 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  IUJ40_RS11655 (IUJ40_11640) cysS 2297401..2298801 (-) 1401 WP_000631963.1 cysteine--tRNA ligase -
  IUJ40_RS11660 (IUJ40_11645) cysE 2298785..2299432 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23000.85 Da        Isoelectric Point: 9.4170

>NTDB_id=501597 IUJ40_RS11635 WP_023487095.1 2295076..2295645(-) (sigH) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKAIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=501597 IUJ40_RS11635 WP_023487095.1 2295076..2295645(-) (sigH) [Staphylococcus aureus strain PartE-Saureus-RM8376]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGCGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.942

100

0.989
  sigH Staphylococcus aureus MW2

97.884

100

0.979