Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   IUJ40_RS09675 Genome accession   NZ_CP064389
Coordinates   1899524..1900510 (-) Length   328 a.a.
NCBI ID   WP_000959287.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PartE-Saureus-RM8376     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894524..1905510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ40_RS09650 (IUJ40_09645) - 1894784..1895131 (-) 348 WP_001242102.1 hypothetical protein -
  IUJ40_RS09655 (IUJ40_09650) - 1895317..1895910 (+) 594 WP_000224622.1 CYTH domain-containing protein -
  IUJ40_RS09660 (IUJ40_09655) - 1896014..1896379 (+) 366 WP_000214065.1 truncated hemoglobin YjbI -
  IUJ40_RS09665 (IUJ40_09660) yjbH 1896402..1897208 (+) 807 WP_000896697.1 protease adaptor protein YjbH -
  IUJ40_RS09670 (IUJ40_09665) pepF 1897668..1899476 (-) 1809 WP_023487078.1 oligoendopeptidase F -
  IUJ40_RS09675 (IUJ40_09670) coiA 1899524..1900510 (-) 987 WP_000959287.1 competence protein CoiA Machinery gene
  IUJ40_RS09680 (IUJ40_09675) mecA 1900631..1901350 (-) 720 WP_001217722.1 adaptor protein MecA -
  IUJ40_RS09685 (IUJ40_09680) spxA 1901721..1902116 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  IUJ40_RS09690 (IUJ40_09685) trpS 1902411..1903400 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  IUJ40_RS09695 (IUJ40_09690) opp4C 1903442..1904323 (-) 882 WP_001180262.1 oligopeptide ABC transporter permease -
  IUJ40_RS09700 (IUJ40_09695) opp4B 1904335..1905297 (-) 963 WP_000593417.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38840.52 Da        Isoelectric Point: 9.7121

>NTDB_id=501592 IUJ40_RS09675 WP_000959287.1 1899524..1900510(-) (coiA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=501592 IUJ40_RS09675 WP_000959287.1 1899524..1900510(-) (coiA) [Staphylococcus aureus strain PartE-Saureus-RM8376]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTATTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.085

100

0.991
  coiA Staphylococcus aureus N315

97.866

100

0.979