Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IUJ40_RS03220 Genome accession   NZ_CP064389
Coordinates   643798..644193 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PartE-Saureus-RM8376     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 638798..649193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ40_RS03190 (IUJ40_03190) - 640056..640460 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  IUJ40_RS03195 (IUJ40_03195) - 640798..640890 (+) 93 WP_001790611.1 hypothetical protein -
  IUJ40_RS03200 (IUJ40_03200) - 641022..641255 (+) 234 WP_000384523.1 DUF1146 family protein -
  IUJ40_RS03205 (IUJ40_03205) murA 641366..642631 (+) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  IUJ40_RS03210 (IUJ40_03210) fabZ 642665..643105 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IUJ40_RS03215 (IUJ40_03215) - 643164..643604 (-) 441 WP_000846746.1 YwpF-like family protein -
  IUJ40_RS03220 (IUJ40_03220) ssb 643798..644193 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  IUJ40_RS03225 (IUJ40_03225) sceD 644582..645277 (+) 696 WP_000752008.1 lytic transglycosylase SceD -
  IUJ40_RS03230 (IUJ40_03230) tenA 645663..646352 (+) 690 WP_000396077.1 thiaminase II -
  IUJ40_RS03235 (IUJ40_03235) thiD 646345..647175 (+) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  IUJ40_RS03240 (IUJ40_03240) thiM 647159..647950 (+) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  IUJ40_RS03245 (IUJ40_03245) thiE 647952..648593 (+) 642 WP_000483153.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=501565 IUJ40_RS03220 WP_000932694.1 643798..644193(+) (ssb) [Staphylococcus aureus strain PartE-Saureus-RM8376]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=501565 IUJ40_RS03220 WP_000932694.1 643798..644193(+) (ssb) [Staphylococcus aureus strain PartE-Saureus-RM8376]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992