Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A7A11_RS14990 Genome accession   NZ_CP076272
Coordinates   3031105..3031842 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain E21845/O/A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3026105..3036842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A11_RS14975 clpC 3026559..3029132 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  A7A11_RS14980 yfiH 3029262..3029993 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  A7A11_RS14985 rluD 3029990..3030970 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A7A11_RS14990 comL 3031105..3031842 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A7A11_RS14995 raiA 3032113..3032454 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A7A11_RS15000 pheL 3032558..3032605 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A7A11_RS15005 pheA 3032704..3033864 (+) 1161 WP_000200116.1 bifunctional chorismate mutase/prephenate dehydratase -
  A7A11_RS15010 tyrA 3033907..3035028 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A7A11_RS15015 aroF 3035039..3036109 (-) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A7A11_RS15020 yfiL 3036319..3036684 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=501509 A7A11_RS14990 WP_000197686.1 3031105..3031842(+) (comL) [Escherichia coli strain E21845/O/A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=501509 A7A11_RS14990 WP_000197686.1 3031105..3031842(+) (comL) [Escherichia coli strain E21845/O/A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376