Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   IUJ52_RS19630 Genome accession   NZ_CP064381
Coordinates   818539..820590 (-) Length   683 a.a.
NCBI ID   WP_004728186.1    Uniprot ID   -
Organism   Vibrio furnissii strain PartQ-Vfurnissii-RM8376     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 813539..825590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ52_RS19615 (IUJ52_19620) clcA 814461..815858 (+) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -
  IUJ52_RS19620 (IUJ52_19625) - 816019..816978 (+) 960 WP_004728184.1 TDT family transporter -
  IUJ52_RS19625 (IUJ52_19630) cqsA 817196..818377 (+) 1182 WP_004728185.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IUJ52_RS19630 (IUJ52_19635) cqsS 818539..820590 (-) 2052 WP_004728186.1 hybrid sensor histidine kinase/response regulator Regulator
  IUJ52_RS19635 (IUJ52_19640) - 820730..823771 (-) 3042 WP_004728187.1 SMC family ATPase -
  IUJ52_RS19640 (IUJ52_19645) - 823775..824917 (-) 1143 WP_004728188.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78730.50 Da        Isoelectric Point: 6.0594

>NTDB_id=501461 IUJ52_RS19630 WP_004728186.1 818539..820590(-) (cqsS) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRSFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIIVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLDIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=501461 IUJ52_RS19630 WP_004728186.1 818539..820590(-) (cqsS) [Vibrio furnissii strain PartQ-Vfurnissii-RM8376]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTTCCGCAGCCCTATGAATCGCTGCTGCTGCGTAGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTATATGATGCTGATGAACGATTGGTCTACGGTGTGGGCAATGTCATTCATGGCATC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCGGCGGCGTATG
GCGCCGTGTATTGGCTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTTCTGTTCACTTAC
GTGTTCGGAAATCTGTTCTATTTCAGAAACCAAAGCTCGCATGAGTCGAAGGTGTCGATCGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGTAACCCGCTCAGTGCGTTGAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGATGGACAGGATTTGACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGACCTGTTACTCACGTCTATCGATGAAAATCGCGTCTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCATGCCCTGCATTCCTTCTCGTACAAACGTGCGTTGGATCGTCAGGCCGTCA
CGCTCAATGCCATCAACGATTTTGACTATTTCGGCAGTGAAACCTTGCTGAAGTTTGCCCTCTACAATTTATTGAAAAAT
GCCTTTTATTATCAGAACAGTGAACATTTTCATATCGAAGTGACGCTCATCACTCGGGGCCAAGAAAACCTCATCATCGT
GCGAGACAACGGCGTGGGCATCGCCCCAGACCGCTTGGATGACATCTTTAAGGACTTCTATACCTTTGGCAAAAATGGCA
GTTATGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGCGGCAACATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGCGTCTCACACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTAAGCGAGAAAGCGTTTTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACGCGTGAAGAGTACGAGTTTGAATACGACATTATTCTGCTGGATTTAGAG
CAGATCGGCGATCAGTGGCAGTCATTAGTCGAGCTGGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATCAATATTGAGCGCCATTTGCGGGTCGTACCTTTAGACATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTGCTGTTTGAGGTGGATGACGTTGCACCGGATCACAATGTTGTGCCGATCAAACAA
CCGAAATATGAACGCCGTATTCTGGTGGTAGATGACAACCAATCACTGCGCACATTCACGGCGTTGCTGCTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCTAATGATGGTCAACAGGCGTTGGATGCAATGGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGCGTGATTCGGGATTCCAATAAGCCGTACTGCCATATT
CCGATTGTTGGCCATACCGGGGATAACAGCCCGCTGACAATTGAGAAAATTCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.064

100

0.592